miRNA display CGI


Results 41 - 60 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1621 3' -62.5 NC_001347.2 + 189871 0.66 0.73277
Target:  5'- cGCGCCGggucgccugucCGGCAGCagccgGGCCGCCucgacCAcGCCg -3'
miRNA:   3'- -UGCGGC-----------GCUGUUG-----CCGGCGGc----GU-CGG- -5'
1621 3' -62.5 NC_001347.2 + 188176 0.68 0.639092
Target:  5'- cACGCUGCccguuCGGCgGCCGuCGGCUa -3'
miRNA:   3'- -UGCGGCGcuguuGCCGgCGGC-GUCGG- -5'
1621 3' -62.5 NC_001347.2 + 187350 0.71 0.446956
Target:  5'- uGCGuuGCGugGccgUGGCgCGUCGCGGCUa -3'
miRNA:   3'- -UGCggCGCugUu--GCCG-GCGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 186041 0.7 0.508239
Target:  5'- cGCGCCaGCGugcCAAUGGUgCGUCGCAGUg -3'
miRNA:   3'- -UGCGG-CGCu--GUUGCCG-GCGGCGUCGg -5'
1621 3' -62.5 NC_001347.2 + 185539 0.69 0.534664
Target:  5'- uACGCCacGCGAU--UGGCCGucggcguCCGCAGUCg -3'
miRNA:   3'- -UGCGG--CGCUGuuGCCGGC-------GGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 185343 0.67 0.667555
Target:  5'- -gGuCCGUG-CGAgcaGGCCGCCGCcgugggGGCCg -3'
miRNA:   3'- ugC-GGCGCuGUUg--CCGGCGGCG------UCGG- -5'
1621 3' -62.5 NC_001347.2 + 185123 0.68 0.648593
Target:  5'- cUGuuGCGGCGcgaGCaGCCGCCggGCGGCa -3'
miRNA:   3'- uGCggCGCUGU---UGcCGGCGG--CGUCGg -5'
1621 3' -62.5 NC_001347.2 + 184957 0.69 0.572797
Target:  5'- -gGCCgGCGugGGCGGCUcgcggagacuggGCUGCAGgCg -3'
miRNA:   3'- ugCGG-CGCugUUGCCGG------------CGGCGUCgG- -5'
1621 3' -62.5 NC_001347.2 + 184921 0.69 0.535584
Target:  5'- cGCGCacacgCGCGAC-ACaGCCGuCUGCAGCUc -3'
miRNA:   3'- -UGCG-----GCGCUGuUGcCGGC-GGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 184490 0.74 0.297609
Target:  5'- -gGCCucggGCGGCc-CGGCCGCCGC-GCCg -3'
miRNA:   3'- ugCGG----CGCUGuuGCCGGCGGCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 184383 0.66 0.73277
Target:  5'- gUGCgGgGACGACGGgCGuuGCGGg- -3'
miRNA:   3'- uGCGgCgCUGUUGCCgGCggCGUCgg -5'
1621 3' -62.5 NC_001347.2 + 184228 0.69 0.572797
Target:  5'- uCGCUaGCGugucGCAGCGuucGCCGCCGUuGCCg -3'
miRNA:   3'- uGCGG-CGC----UGUUGC---CGGCGGCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 183603 0.66 0.757076
Target:  5'- gACGCCgguuuGCG-CAgcGCGGCagaGCCgaugagcccucuaaGCAGCCg -3'
miRNA:   3'- -UGCGG-----CGCuGU--UGCCGg--CGG--------------CGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 183472 0.7 0.481501
Target:  5'- cGCGCCuCGGCcuCGGgagaCGCgCGCAGCCc -3'
miRNA:   3'- -UGCGGcGCUGuuGCCg---GCG-GCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 182121 0.67 0.695795
Target:  5'- --cCCGCGGgucuuCGACGucGCUGCCGUAGCUa -3'
miRNA:   3'- ugcGGCGCU-----GUUGC--CGGCGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 181805 0.71 0.455465
Target:  5'- gGCGCCGC--CAACGGCaUGCCGCcccucaccccGCCa -3'
miRNA:   3'- -UGCGGCGcuGUUGCCG-GCGGCGu---------CGG- -5'
1621 3' -62.5 NC_001347.2 + 181410 0.69 0.554098
Target:  5'- gACGaggaUGaCGACGACGaGCUGUCGCuGCCu -3'
miRNA:   3'- -UGCg---GC-GCUGUUGC-CGGCGGCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 181315 0.67 0.677003
Target:  5'- --aCCGUuuCAGCGGCCGgCGUgaGGCCa -3'
miRNA:   3'- ugcGGCGcuGUUGCCGGCgGCG--UCGG- -5'
1621 3' -62.5 NC_001347.2 + 180415 0.66 0.723621
Target:  5'- -aGCaggaauGCGGCAccCGGCUGCaCGUGGCCu -3'
miRNA:   3'- ugCGg-----CGCUGUu-GCCGGCG-GCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 178865 0.67 0.685478
Target:  5'- gGCcuCCGuCGAgAGCGaguuguccucgucGCCGCCGCuGCCg -3'
miRNA:   3'- -UGc-GGC-GCUgUUGC-------------CGGCGGCGuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.