miRNA display CGI


Results 61 - 80 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1621 3' -62.5 NC_001347.2 + 178737 0.68 0.59164
Target:  5'- cACGCCccgGCG-CAACGggugcuguccgcGCCGCCG-AGCCu -3'
miRNA:   3'- -UGCGG---CGCuGUUGC------------CGGCGGCgUCGG- -5'
1621 3' -62.5 NC_001347.2 + 178553 0.71 0.464061
Target:  5'- cGCGUCGCGACAagaauacggaGgGGCCG-CGCAcuuuuGCCa -3'
miRNA:   3'- -UGCGGCGCUGU----------UgCCGGCgGCGU-----CGG- -5'
1621 3' -62.5 NC_001347.2 + 177854 0.71 0.438536
Target:  5'- gAUGCUGCaGcACAACGGCCcCCaGCAGUCu -3'
miRNA:   3'- -UGCGGCG-C-UGUUGCCGGcGG-CGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 176347 0.68 0.610585
Target:  5'- cUGCCGaGACGACGGuaacaaCCGCCGCcGUg -3'
miRNA:   3'- uGCGGCgCUGUUGCC------GGCGGCGuCGg -5'
1621 3' -62.5 NC_001347.2 + 175427 0.69 0.551308
Target:  5'- gUGCC-CGACGACGGuuuccacgccaCCGCCGCcaccacccgacugcAGCCc -3'
miRNA:   3'- uGCGGcGCUGUUGCC-----------GGCGGCG--------------UCGG- -5'
1621 3' -62.5 NC_001347.2 + 174429 0.7 0.526408
Target:  5'- uCGUCGCGuCAGCGGCacgguGCUGCgucucagcuGGCCa -3'
miRNA:   3'- uGCGGCGCuGUUGCCGg----CGGCG---------UCGG- -5'
1621 3' -62.5 NC_001347.2 + 174246 0.66 0.750835
Target:  5'- gACGaccuCCGCGu---CGGUCGCCGCcuccgcGGCCc -3'
miRNA:   3'- -UGC----GGCGCuguuGCCGGCGGCG------UCGG- -5'
1621 3' -62.5 NC_001347.2 + 174097 0.66 0.723621
Target:  5'- gUGuCCGCgGACAcccGCGGCCGuacCCGCcccagcagaccAGCCa -3'
miRNA:   3'- uGC-GGCG-CUGU---UGCCGGC---GGCG-----------UCGG- -5'
1621 3' -62.5 NC_001347.2 + 174027 0.71 0.464061
Target:  5'- aACGCCGgcggaGACGACGGCgGUUuCAGCUg -3'
miRNA:   3'- -UGCGGCg----CUGUUGCCGgCGGcGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 173537 0.77 0.208349
Target:  5'- cGCGUgGCGGCGGCGGUggugGCgGCAGCCu -3'
miRNA:   3'- -UGCGgCGCUGUUGCCGg---CGgCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 172697 0.7 0.508239
Target:  5'- -aGCCGcCGACGcUGG-CGCUGCGGCUg -3'
miRNA:   3'- ugCGGC-GCUGUuGCCgGCGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 170786 0.71 0.430207
Target:  5'- uCGCCGUGGCGuugACGGCCGCUaucgagaacaGUAGgCa -3'
miRNA:   3'- uGCGGCGCUGU---UGCCGGCGG----------CGUCgG- -5'
1621 3' -62.5 NC_001347.2 + 170134 0.73 0.345125
Target:  5'- gACG-CGUGACAGCGGucCCGCCGU-GCCc -3'
miRNA:   3'- -UGCgGCGCUGUUGCC--GGCGGCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 170096 0.67 0.658083
Target:  5'- uCGCCGUcuccCGACGGCaCGCCGUcuguGCUg -3'
miRNA:   3'- uGCGGCGcu--GUUGCCG-GCGGCGu---CGG- -5'
1621 3' -62.5 NC_001347.2 + 169133 0.68 0.639092
Target:  5'- cGCGCCGCGcuGCAGUGGCUGgaccugggcCCGCAucugcugcaccGCCg -3'
miRNA:   3'- -UGCGGCGC--UGUUGCCGGC---------GGCGU-----------CGG- -5'
1621 3' -62.5 NC_001347.2 + 168809 0.75 0.261052
Target:  5'- cGCGCgGUGGCcaAACGGCCGCgCGaccCGGCCg -3'
miRNA:   3'- -UGCGgCGCUG--UUGCCGGCG-GC---GUCGG- -5'
1621 3' -62.5 NC_001347.2 + 168352 0.69 0.553168
Target:  5'- cCGCCGCcGCcGCGguGCCGCCGCucuguucGGCUa -3'
miRNA:   3'- uGCGGCGcUGuUGC--CGGCGGCG-------UCGG- -5'
1621 3' -62.5 NC_001347.2 + 168200 0.73 0.345125
Target:  5'- cACGgCGCGACAAUugacguagGGCCGCgccuccgugGCAGCCg -3'
miRNA:   3'- -UGCgGCGCUGUUG--------CCGGCGg--------CGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 167229 0.67 0.695795
Target:  5'- cGCGCCGCGA-GACGGaCGCaagguaaacaggUGCAcGCCc -3'
miRNA:   3'- -UGCGGCGCUgUUGCCgGCG------------GCGU-CGG- -5'
1621 3' -62.5 NC_001347.2 + 167190 0.69 0.563427
Target:  5'- gACGCCGUcaagcggaGGCAAaggcgaGGCCGCgC-CGGCCg -3'
miRNA:   3'- -UGCGGCG--------CUGUUg-----CCGGCG-GcGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.