miRNA display CGI


Results 41 - 60 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1621 3' -62.5 NC_001347.2 + 8207 0.66 0.759737
Target:  5'- -aGCCGguagGACAGCGgcgcauacccacGCCGCCGUGGgCg -3'
miRNA:   3'- ugCGGCg---CUGUUGC------------CGGCGGCGUCgG- -5'
1621 3' -62.5 NC_001347.2 + 35309 0.66 0.759737
Target:  5'- gGCGCCGgGACucuggugcuAUGGCUGCUcaauGCCa -3'
miRNA:   3'- -UGCGGCgCUGu--------UGCCGGCGGcgu-CGG- -5'
1621 3' -62.5 NC_001347.2 + 2165 0.66 0.759737
Target:  5'- gACGCgGCagcaGCAGCGG-CGCCGaCGGUg -3'
miRNA:   3'- -UGCGgCGc---UGUUGCCgGCGGC-GUCGg -5'
1621 3' -62.5 NC_001347.2 + 87244 0.66 0.759737
Target:  5'- gACGgUGCGAgCAguuggggauGCGGCgCGCCGUAcCCg -3'
miRNA:   3'- -UGCgGCGCU-GU---------UGCCG-GCGGCGUcGG- -5'
1621 3' -62.5 NC_001347.2 + 63264 0.66 0.76327
Target:  5'- cCGCCGUGGCcaccAACGGCgGUaaCGCcaccuacauuuugccGGCCg -3'
miRNA:   3'- uGCGGCGCUG----UUGCCGgCG--GCG---------------UCGG- -5'
1621 3' -62.5 NC_001347.2 + 86209 0.66 0.74994
Target:  5'- cCGCCGUGc---CGGUCGUCGCaccgcucGGCCa -3'
miRNA:   3'- uGCGGCGCuguuGCCGGCGGCG-------UCGG- -5'
1621 3' -62.5 NC_001347.2 + 106285 0.66 0.745451
Target:  5'- aAUGCCGcCGcCAACGccgagcucugucggcGCCGCCGCucacuuuccucGCCa -3'
miRNA:   3'- -UGCGGC-GCuGUUGC---------------CGGCGGCGu----------CGG- -5'
1621 3' -62.5 NC_001347.2 + 195437 0.66 0.736409
Target:  5'- aACcCCGUGGauCAGCcGCCGCCuccacugccaacccaGCAGCCg -3'
miRNA:   3'- -UGcGGCGCU--GUUGcCGGCGG---------------CGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 152387 0.66 0.736409
Target:  5'- uCGCCuGCGACGgcggguggagaugagGCGGCguggacugggaCgaggaggagggGCCGCAGCCg -3'
miRNA:   3'- uGCGG-CGCUGU---------------UGCCG-----------G-----------CGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 711 0.66 0.73913
Target:  5'- gGCGCCaaGGCGGCGccagcacgcgccguGCaCGUCGCuGCCu -3'
miRNA:   3'- -UGCGGcgCUGUUGC--------------CG-GCGGCGuCGG- -5'
1621 3' -62.5 NC_001347.2 + 40092 0.66 0.741844
Target:  5'- aACGCCcgggggcgaGgGACGACGGCC-CUGgGGaCCg -3'
miRNA:   3'- -UGCGG---------CgCUGUUGCCGGcGGCgUC-GG- -5'
1621 3' -62.5 NC_001347.2 + 24326 0.66 0.741844
Target:  5'- gACGaCUaUGAUgaAGCGGCCGUgGUGGCCg -3'
miRNA:   3'- -UGC-GGcGCUG--UUGCCGGCGgCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 43118 0.66 0.741844
Target:  5'- -gGCCacuGCGAuCAGCGGCaUGCCGaC-GCCg -3'
miRNA:   3'- ugCGG---CGCU-GUUGCCG-GCGGC-GuCGG- -5'
1621 3' -62.5 NC_001347.2 + 77761 0.66 0.741844
Target:  5'- aGCGagGCGGCcgAGCGGgCGCaauuuguacgCGCGGCCg -3'
miRNA:   3'- -UGCggCGCUG--UUGCCgGCG----------GCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 79049 0.66 0.741844
Target:  5'- -aGCCGCGAgaaGGCGcGUCGgCGCcaaaugAGCCg -3'
miRNA:   3'- ugCGGCGCUg--UUGC-CGGCgGCG------UCGG- -5'
1621 3' -62.5 NC_001347.2 + 85956 0.66 0.741844
Target:  5'- gACGCCgGCGcGCGaacccguguaguGCGaGCCGCCGCcacCCg -3'
miRNA:   3'- -UGCGG-CGC-UGU------------UGC-CGGCGGCGuc-GG- -5'
1621 3' -62.5 NC_001347.2 + 147906 0.66 0.741844
Target:  5'- -gGCCGUGgguggcGCggUGGCCuCCGUGGUCg -3'
miRNA:   3'- ugCGGCGC------UGuuGCCGGcGGCGUCGG- -5'
1621 3' -62.5 NC_001347.2 + 142795 0.66 0.741844
Target:  5'- cCGCCGCaACAGCGGCgacagacggCGUCGCA-UCa -3'
miRNA:   3'- uGCGGCGcUGUUGCCG---------GCGGCGUcGG- -5'
1621 3' -62.5 NC_001347.2 + 208818 0.66 0.741844
Target:  5'- -aGCCGCuGCGcCGcGCCGCCGUccucgaagcGCCa -3'
miRNA:   3'- ugCGGCGcUGUuGC-CGGCGGCGu--------CGG- -5'
1621 3' -62.5 NC_001347.2 + 63514 0.66 0.741844
Target:  5'- gAUGCCGC-ACAc--GCCacagGCCGUAGCCa -3'
miRNA:   3'- -UGCGGCGcUGUugcCGG----CGGCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.