Results 81 - 100 of 340 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1621 | 3' | -62.5 | NC_001347.2 | + | 44351 | 0.66 | 0.723621 |
Target: 5'- aGCGCCGacCGAcCAGcCGGCCGauuCGCccGCCg -3' miRNA: 3'- -UGCGGC--GCU-GUU-GCCGGCg--GCGu-CGG- -5' |
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1621 | 3' | -62.5 | NC_001347.2 | + | 103565 | 0.66 | 0.723621 |
Target: 5'- uACGCCGCuGCuGCaGGCCuGUCGUgaacuguuuuuGGCCg -3' miRNA: 3'- -UGCGGCGcUGuUG-CCGG-CGGCG-----------UCGG- -5' |
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1621 | 3' | -62.5 | NC_001347.2 | + | 101249 | 0.66 | 0.723621 |
Target: 5'- gUGCCGCGuguggcCAGCGG-CGCCGguuuGCCc -3' miRNA: 3'- uGCGGCGCu-----GUUGCCgGCGGCgu--CGG- -5' |
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1621 | 3' | -62.5 | NC_001347.2 | + | 89685 | 0.66 | 0.723621 |
Target: 5'- uCGaCCGC-ACAAgcgcCGGCCccGCCGCcGCCa -3' miRNA: 3'- uGC-GGCGcUGUU----GCCGG--CGGCGuCGG- -5' |
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1621 | 3' | -62.5 | NC_001347.2 | + | 26047 | 0.66 | 0.723621 |
Target: 5'- uACGCCGC-----CGGgCGCUGCGGUCc -3' miRNA: 3'- -UGCGGCGcuguuGCCgGCGGCGUCGG- -5' |
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1621 | 3' | -62.5 | NC_001347.2 | + | 165273 | 0.66 | 0.723621 |
Target: 5'- -aGCgGgCGACAGCuGCaCGCCGaAGCCc -3' miRNA: 3'- ugCGgC-GCUGUUGcCG-GCGGCgUCGG- -5' |
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1621 | 3' | -62.5 | NC_001347.2 | + | 174097 | 0.66 | 0.723621 |
Target: 5'- gUGuCCGCgGACAcccGCGGCCGuacCCGCcccagcagaccAGCCa -3' miRNA: 3'- uGC-GGCG-CUGU---UGCCGGC---GGCG-----------UCGG- -5' |
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1621 | 3' | -62.5 | NC_001347.2 | + | 199723 | 0.66 | 0.723621 |
Target: 5'- cCGCUGCGAUcuGCGGuuGCCGaC-GCg -3' miRNA: 3'- uGCGGCGCUGu-UGCCggCGGC-GuCGg -5' |
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1621 | 3' | -62.5 | NC_001347.2 | + | 128461 | 0.66 | 0.723621 |
Target: 5'- aGCGgCGCGACGGC-GCgCGCaCGCGGg- -3' miRNA: 3'- -UGCgGCGCUGUUGcCG-GCG-GCGUCgg -5' |
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1621 | 3' | -62.5 | NC_001347.2 | + | 77071 | 0.66 | 0.73277 |
Target: 5'- gACGaaGCGGCAGCGGCgGCagaaGaggaGGCg -3' miRNA: 3'- -UGCggCGCUGUUGCCGgCGg---Cg---UCGg -5' |
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1621 | 3' | -62.5 | NC_001347.2 | + | 711 | 0.66 | 0.73913 |
Target: 5'- gGCGCCaaGGCGGCGccagcacgcgccguGCaCGUCGCuGCCu -3' miRNA: 3'- -UGCGGcgCUGUUGC--------------CG-GCGGCGuCGG- -5' |
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1621 | 3' | -62.5 | NC_001347.2 | + | 152387 | 0.66 | 0.736409 |
Target: 5'- uCGCCuGCGACGgcggguggagaugagGCGGCguggacugggaCgaggaggagggGCCGCAGCCg -3' miRNA: 3'- uGCGG-CGCUGU---------------UGCCG-----------G-----------CGGCGUCGG- -5' |
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1621 | 3' | -62.5 | NC_001347.2 | + | 195437 | 0.66 | 0.736409 |
Target: 5'- aACcCCGUGGauCAGCcGCCGCCuccacugccaacccaGCAGCCg -3' miRNA: 3'- -UGcGGCGCU--GUUGcCGGCGG---------------CGUCGG- -5' |
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1621 | 3' | -62.5 | NC_001347.2 | + | 27672 | 0.66 | 0.73277 |
Target: 5'- cGCGuuacauCCGCGACGAacugcCGGCUGCucagacguuaCGCGGCUc -3' miRNA: 3'- -UGC------GGCGCUGUU-----GCCGGCG----------GCGUCGG- -5' |
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1621 | 3' | -62.5 | NC_001347.2 | + | 82317 | 0.66 | 0.73277 |
Target: 5'- aGCGCUGCGGuuuCcACGcccaguGCCGgUGCGGCCu -3' miRNA: 3'- -UGCGGCGCU---GuUGC------CGGCgGCGUCGG- -5' |
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1621 | 3' | -62.5 | NC_001347.2 | + | 189871 | 0.66 | 0.73277 |
Target: 5'- cGCGCCGggucgccugucCGGCAGCagccgGGCCGCCucgacCAcGCCg -3' miRNA: 3'- -UGCGGC-----------GCUGUUG-----CCGGCGGc----GU-CGG- -5' |
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1621 | 3' | -62.5 | NC_001347.2 | + | 111624 | 0.66 | 0.73277 |
Target: 5'- uGCGCaGCGACAuggACGGCgaCGugcguaCCGCGGCa -3' miRNA: 3'- -UGCGgCGCUGU---UGCCG--GC------GGCGUCGg -5' |
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1621 | 3' | -62.5 | NC_001347.2 | + | 20432 | 0.66 | 0.73277 |
Target: 5'- uGCGCCGCaGCGGCuuuguGCCGagaCCGUcGCCa -3' miRNA: 3'- -UGCGGCGcUGUUGc----CGGC---GGCGuCGG- -5' |
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1621 | 3' | -62.5 | NC_001347.2 | + | 184383 | 0.66 | 0.73277 |
Target: 5'- gUGCgGgGACGACGGgCGuuGCGGg- -3' miRNA: 3'- uGCGgCgCUGUUGCCgGCggCGUCgg -5' |
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1621 | 3' | -62.5 | NC_001347.2 | + | 1982 | 0.66 | 0.73277 |
Target: 5'- -gGCgGgGACGACGucCCGCCaGCGGCg -3' miRNA: 3'- ugCGgCgCUGUUGCc-GGCGG-CGUCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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