miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1621 5' -47.6 NC_001347.2 + 192064 0.66 0.999974
Target:  5'- nCGACGACA-CGGCGACGGUCaaCAGg -3'
miRNA:   3'- cGUUGUUGUcGUUGUUGUCAGc-GUCg -5'
1621 5' -47.6 NC_001347.2 + 82728 0.66 0.999974
Target:  5'- uGguGCAGCGGCGGCugAGCGGUCa---- -3'
miRNA:   3'- -CguUGUUGUCGUUG--UUGUCAGcgucg -5'
1621 5' -47.6 NC_001347.2 + 83895 0.66 0.999974
Target:  5'- cGCGGacGCGGUAGCGGCAGUgucaaguaccaggCGCuGGCc -3'
miRNA:   3'- -CGUUguUGUCGUUGUUGUCA-------------GCG-UCG- -5'
1621 5' -47.6 NC_001347.2 + 124945 0.66 0.999974
Target:  5'- gGCAGCGucucuuGCGGCGcCGACuccUUGUAGCg -3'
miRNA:   3'- -CGUUGU------UGUCGUuGUUGuc-AGCGUCG- -5'
1621 5' -47.6 NC_001347.2 + 75468 0.66 0.999974
Target:  5'- cGCGcCAGCucacGCAACAucuccuCGGUCGUguagGGCg -3'
miRNA:   3'- -CGUuGUUGu---CGUUGUu-----GUCAGCG----UCG- -5'
1621 5' -47.6 NC_001347.2 + 228573 0.66 0.999974
Target:  5'- uGCcGCGGCAGCGuACGACGuUCcaguCAGCg -3'
miRNA:   3'- -CGuUGUUGUCGU-UGUUGUcAGc---GUCG- -5'
1621 5' -47.6 NC_001347.2 + 197548 0.66 0.999974
Target:  5'- cGCAGCGuggccggcgugGCGGcCGACGGCAGcgUGCuguGCu -3'
miRNA:   3'- -CGUUGU-----------UGUC-GUUGUUGUCa-GCGu--CG- -5'
1621 5' -47.6 NC_001347.2 + 39499 0.66 0.999974
Target:  5'- --cGCGGCcGCGACcaaggGGCGGggggCGCGGCg -3'
miRNA:   3'- cguUGUUGuCGUUG-----UUGUCa---GCGUCG- -5'
1621 5' -47.6 NC_001347.2 + 117341 0.66 0.999974
Target:  5'- gGCGACGgggccuucccaaGCGGCAaucucACGACucacGUCGuCGGCc -3'
miRNA:   3'- -CGUUGU------------UGUCGU-----UGUUGu---CAGC-GUCG- -5'
1621 5' -47.6 NC_001347.2 + 198982 0.66 0.999974
Target:  5'- cGCGGCGAUucgGGCGugccGCGAU-GcCGCAGCu -3'
miRNA:   3'- -CGUUGUUG---UCGU----UGUUGuCaGCGUCG- -5'
1621 5' -47.6 NC_001347.2 + 22895 0.66 0.999965
Target:  5'- gGguGCAGCAGUAcgccgagaaacACGGCGGacgcaUCGaCGGCg -3'
miRNA:   3'- -CguUGUUGUCGU-----------UGUUGUC-----AGC-GUCG- -5'
1621 5' -47.6 NC_001347.2 + 219054 0.66 0.999965
Target:  5'- -aAACggUGGUuGCugguGCAGUUGCAGUa -3'
miRNA:   3'- cgUUGuuGUCGuUGu---UGUCAGCGUCG- -5'
1621 5' -47.6 NC_001347.2 + 186086 0.66 0.999965
Target:  5'- --uGCAugGGCca-GGCGGUUGUGGCa -3'
miRNA:   3'- cguUGUugUCGuugUUGUCAGCGUCG- -5'
1621 5' -47.6 NC_001347.2 + 129969 0.66 0.999965
Target:  5'- -gGACGGCuGgGGCGACcaUUGCAGCa -3'
miRNA:   3'- cgUUGUUGuCgUUGUUGucAGCGUCG- -5'
1621 5' -47.6 NC_001347.2 + 15392 0.66 0.999965
Target:  5'- aGCGGCGuauuCuGCAGCAGCAGUaUGacuGGCu -3'
miRNA:   3'- -CGUUGUu---GuCGUUGUUGUCA-GCg--UCG- -5'
1621 5' -47.6 NC_001347.2 + 140551 0.66 0.999965
Target:  5'- aCGGCAAaGGUGACGACGGgguuccggGCGGCg -3'
miRNA:   3'- cGUUGUUgUCGUUGUUGUCag------CGUCG- -5'
1621 5' -47.6 NC_001347.2 + 106703 0.66 0.999965
Target:  5'- -gGAUGACcGCAACGACGaucGUgaaCGCGGCa -3'
miRNA:   3'- cgUUGUUGuCGUUGUUGU---CA---GCGUCG- -5'
1621 5' -47.6 NC_001347.2 + 4798 0.66 0.999954
Target:  5'- cCAAC-GCGGCuGACAGCAcgaGCGGCa -3'
miRNA:   3'- cGUUGuUGUCG-UUGUUGUcagCGUCG- -5'
1621 5' -47.6 NC_001347.2 + 7656 0.66 0.999954
Target:  5'- cGCAAUucggGGCGGUAAgAACGGUacauuccugaacCGUAGCc -3'
miRNA:   3'- -CGUUG----UUGUCGUUgUUGUCA------------GCGUCG- -5'
1621 5' -47.6 NC_001347.2 + 77944 0.66 0.999954
Target:  5'- aGCGGCuggaGGC-GCAGCuG-CGCGGCa -3'
miRNA:   3'- -CGUUGuug-UCGuUGUUGuCaGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.