miRNA display CGI


Results 21 - 40 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1621 5' -47.6 NC_001347.2 + 112799 0.66 0.999954
Target:  5'- cGCGGgauaaGACGGCAAaGGCAG-CGguGCu -3'
miRNA:   3'- -CGUUg----UUGUCGUUgUUGUCaGCguCG- -5'
1621 5' -47.6 NC_001347.2 + 77944 0.66 0.999954
Target:  5'- aGCGGCuggaGGC-GCAGCuG-CGCGGCa -3'
miRNA:   3'- -CGUUGuug-UCGuUGUUGuCaGCGUCG- -5'
1621 5' -47.6 NC_001347.2 + 7656 0.66 0.999954
Target:  5'- cGCAAUucggGGCGGUAAgAACGGUacauuccugaacCGUAGCc -3'
miRNA:   3'- -CGUUG----UUGUCGUUgUUGUCA------------GCGUCG- -5'
1621 5' -47.6 NC_001347.2 + 4798 0.66 0.999954
Target:  5'- cCAAC-GCGGCuGACAGCAcgaGCGGCa -3'
miRNA:   3'- cGUUGuUGUCG-UUGUUGUcagCGUCG- -5'
1621 5' -47.6 NC_001347.2 + 142440 0.66 0.999954
Target:  5'- cGCGGCGucCGGCGuCGGgGGUgGCGGUc -3'
miRNA:   3'- -CGUUGUu-GUCGUuGUUgUCAgCGUCG- -5'
1621 5' -47.6 NC_001347.2 + 140895 0.66 0.999938
Target:  5'- uCAAgAGCAGCcGCGACgaGGUgGCGGg -3'
miRNA:   3'- cGUUgUUGUCGuUGUUG--UCAgCGUCg -5'
1621 5' -47.6 NC_001347.2 + 37663 0.66 0.999938
Target:  5'- aGCAcugAGCGGUGGgGGCAucGUUGCAGCg -3'
miRNA:   3'- -CGUug-UUGUCGUUgUUGU--CAGCGUCG- -5'
1621 5' -47.6 NC_001347.2 + 88706 0.66 0.999937
Target:  5'- cGCAAUGGCGGCGGauccCAGCccugAGUCGUcguuccgAGCg -3'
miRNA:   3'- -CGUUGUUGUCGUU----GUUG----UCAGCG-------UCG- -5'
1621 5' -47.6 NC_001347.2 + 9277 0.67 0.999919
Target:  5'- aCAGCAGCGGauugaGACAACAGUgacaaaagGCgAGCg -3'
miRNA:   3'- cGUUGUUGUCg----UUGUUGUCAg-------CG-UCG- -5'
1621 5' -47.6 NC_001347.2 + 89939 0.67 0.999919
Target:  5'- --uACAGCAGCcACAGCAgggccuccacGUCGCAc- -3'
miRNA:   3'- cguUGUUGUCGuUGUUGU----------CAGCGUcg -5'
1621 5' -47.6 NC_001347.2 + 38622 0.67 0.999919
Target:  5'- cGCGccCAGCAGUAccaucgGCuGCAGUCGCcugcccGGCg -3'
miRNA:   3'- -CGUu-GUUGUCGU------UGuUGUCAGCG------UCG- -5'
1621 5' -47.6 NC_001347.2 + 11204 0.67 0.999919
Target:  5'- uCAACAGauCGGCuACAGCcaGGUUGCAGa -3'
miRNA:   3'- cGUUGUU--GUCGuUGUUG--UCAGCGUCg -5'
1621 5' -47.6 NC_001347.2 + 7881 0.67 0.999919
Target:  5'- aCGGCggUAGUGACcaggugguCAGUgGCGGCg -3'
miRNA:   3'- cGUUGuuGUCGUUGuu------GUCAgCGUCG- -5'
1621 5' -47.6 NC_001347.2 + 97403 0.67 0.999919
Target:  5'- gGCAcucuGCAACAGCGGCGcUAGaCGCuccuccaucucgGGCg -3'
miRNA:   3'- -CGU----UGUUGUCGUUGUuGUCaGCG------------UCG- -5'
1621 5' -47.6 NC_001347.2 + 8028 0.67 0.999919
Target:  5'- -aGugGACGGCGAUAACGccacgcGUCGCcagaaaAGCa -3'
miRNA:   3'- cgUugUUGUCGUUGUUGU------CAGCG------UCG- -5'
1621 5' -47.6 NC_001347.2 + 65242 0.67 0.999919
Target:  5'- gGCuACGACcucacGCGACugucauACGGgCGCAGCa -3'
miRNA:   3'- -CGuUGUUGu----CGUUGu-----UGUCaGCGUCG- -5'
1621 5' -47.6 NC_001347.2 + 159453 0.67 0.999919
Target:  5'- uGCGGCcGCGGCcgcucgauGACGAUgucGG-CGCGGCg -3'
miRNA:   3'- -CGUUGuUGUCG--------UUGUUG---UCaGCGUCG- -5'
1621 5' -47.6 NC_001347.2 + 116705 0.67 0.999919
Target:  5'- cGCGACGugAGgGAUccCAGcCGCuGCg -3'
miRNA:   3'- -CGUUGUugUCgUUGuuGUCaGCGuCG- -5'
1621 5' -47.6 NC_001347.2 + 108200 0.67 0.999894
Target:  5'- cGCGcaGGCAGCAugGagucgcGCGGUCGCcGUu -3'
miRNA:   3'- -CGUugUUGUCGUugU------UGUCAGCGuCG- -5'
1621 5' -47.6 NC_001347.2 + 185912 0.67 0.999894
Target:  5'- uGCGAUcuCAGgAaagcGCGGCGGUC-CAGCa -3'
miRNA:   3'- -CGUUGuuGUCgU----UGUUGUCAGcGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.