miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16210 3' -54.7 NC_004065.1 + 130050 0.66 0.979643
Target:  5'- --aCUCAcGCUCaCUUGG-CGG-ACGGCg -3'
miRNA:   3'- guaGAGU-CGAG-GAGCCaGCCuUGCUG- -5'
16210 3' -54.7 NC_004065.1 + 121050 0.66 0.979643
Target:  5'- gAUCgUC-GCguaCUUGGUCGcGAACGACa -3'
miRNA:   3'- gUAG-AGuCGag-GAGCCAGC-CUUGCUG- -5'
16210 3' -54.7 NC_004065.1 + 67505 0.66 0.977395
Target:  5'- gAUCUCGGCgcugucguUCUUCGGggccaugaUCGGAgacuucuacuACGACg -3'
miRNA:   3'- gUAGAGUCG--------AGGAGCC--------AGCCU----------UGCUG- -5'
16210 3' -54.7 NC_004065.1 + 133495 0.66 0.977395
Target:  5'- uCGUC-CAGCUCCUCGGacucgucgUCGuccucCGACg -3'
miRNA:   3'- -GUAGaGUCGAGGAGCC--------AGCcuu--GCUG- -5'
16210 3' -54.7 NC_004065.1 + 34473 0.66 0.977395
Target:  5'- gGUCUCGGCuaUCC-CGGaCGGAGCc-- -3'
miRNA:   3'- gUAGAGUCG--AGGaGCCaGCCUUGcug -5'
16210 3' -54.7 NC_004065.1 + 120542 0.66 0.977395
Target:  5'- gGUCUcCGGUgugCCggcggCGGUCGGcGCGAg -3'
miRNA:   3'- gUAGA-GUCGa--GGa----GCCAGCCuUGCUg -5'
16210 3' -54.7 NC_004065.1 + 131340 0.66 0.97497
Target:  5'- cCAUgaCGGgUCCcgUCGaUCGGGACGACg -3'
miRNA:   3'- -GUAgaGUCgAGG--AGCcAGCCUUGCUG- -5'
16210 3' -54.7 NC_004065.1 + 194434 0.66 0.97497
Target:  5'- -uUCUCcccgGGCgCCUCGGUCGaAGCGGu -3'
miRNA:   3'- guAGAG----UCGaGGAGCCAGCcUUGCUg -5'
16210 3' -54.7 NC_004065.1 + 22283 0.66 0.974718
Target:  5'- gGUCUguGUcauucgaUCgUCGGUgGGGugGACg -3'
miRNA:   3'- gUAGAguCG-------AGgAGCCAgCCUugCUG- -5'
16210 3' -54.7 NC_004065.1 + 118181 0.66 0.96956
Target:  5'- cCGUCaCGGCUgCCgccguUCGGUUGGcGCGGCu -3'
miRNA:   3'- -GUAGaGUCGA-GG-----AGCCAGCCuUGCUG- -5'
16210 3' -54.7 NC_004065.1 + 157750 0.67 0.966563
Target:  5'- gCGUCgCGGUUCCUCGGgu---GCGACg -3'
miRNA:   3'- -GUAGaGUCGAGGAGCCagccuUGCUG- -5'
16210 3' -54.7 NC_004065.1 + 43191 0.67 0.963363
Target:  5'- --aCUCGGgaUCCUCGGg-GGAACGGg -3'
miRNA:   3'- guaGAGUCg-AGGAGCCagCCUUGCUg -5'
16210 3' -54.7 NC_004065.1 + 119791 0.67 0.963363
Target:  5'- -cUUUCAGCUCCUCGGgcUCGaaGAA-GACc -3'
miRNA:   3'- guAGAGUCGAGGAGCC--AGC--CUUgCUG- -5'
16210 3' -54.7 NC_004065.1 + 176578 0.67 0.959956
Target:  5'- -cUCUCgGGCacgaccaCCgUCGGUCGGGGCGAg -3'
miRNA:   3'- guAGAG-UCGa------GG-AGCCAGCCUUGCUg -5'
16210 3' -54.7 NC_004065.1 + 52047 0.67 0.959956
Target:  5'- uCGUUggCAGuCUCCUCGG-CGaAGCGGCg -3'
miRNA:   3'- -GUAGa-GUC-GAGGAGCCaGCcUUGCUG- -5'
16210 3' -54.7 NC_004065.1 + 161153 0.67 0.956336
Target:  5'- cCGUCUgcagguacagCAGgUCCUCGGUCagcuGAGCGAg -3'
miRNA:   3'- -GUAGA----------GUCgAGGAGCCAGc---CUUGCUg -5'
16210 3' -54.7 NC_004065.1 + 149030 0.67 0.956336
Target:  5'- --cCUCGGgCUgaCCUCGGgagCGGGcgACGACg -3'
miRNA:   3'- guaGAGUC-GA--GGAGCCa--GCCU--UGCUG- -5'
16210 3' -54.7 NC_004065.1 + 228390 0.67 0.9525
Target:  5'- --gCUCGGUg--UCGGUCGG-ACGACa -3'
miRNA:   3'- guaGAGUCGaggAGCCAGCCuUGCUG- -5'
16210 3' -54.7 NC_004065.1 + 176913 0.67 0.9525
Target:  5'- uCAUCUCucucuGCUCCUgaGGUUGGuGCGcCa -3'
miRNA:   3'- -GUAGAGu----CGAGGAg-CCAGCCuUGCuG- -5'
16210 3' -54.7 NC_004065.1 + 136483 0.68 0.948444
Target:  5'- gCAUCggCGGCUCCggCGGUCuGGAccccaGCGuCa -3'
miRNA:   3'- -GUAGa-GUCGAGGa-GCCAG-CCU-----UGCuG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.