Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16210 | 5' | -59.7 | NC_004065.1 | + | 200216 | 1.07 | 0.002873 |
Target: 5'- cCGGACGACCUGGCCGAGCAGCGUGUAa -3' miRNA: 3'- -GCCUGCUGGACCGGCUCGUCGCACAU- -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 81712 | 0.77 | 0.269913 |
Target: 5'- uGGGCGACCUggcGGCCGAGguGCugaacaccguGUGUAa -3' miRNA: 3'- gCCUGCUGGA---CCGGCUCguCG----------CACAU- -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 183274 | 0.74 | 0.397756 |
Target: 5'- uCGGGgGACCUGGaggaGAGCAGCGcGUGc -3' miRNA: 3'- -GCCUgCUGGACCgg--CUCGUCGCaCAU- -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 6163 | 0.72 | 0.529927 |
Target: 5'- cCGaGAUGGCCgGGCCGGGCGGCcgaGUAc -3' miRNA: 3'- -GC-CUGCUGGaCCGGCUCGUCGca-CAU- -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 31698 | 0.71 | 0.568011 |
Target: 5'- aGGGgGAUCUGGCCGuuccGCGGCaUGUGc -3' miRNA: 3'- gCCUgCUGGACCGGCu---CGUCGcACAU- -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 116801 | 0.7 | 0.626242 |
Target: 5'- aCGuACGugUUGGCCGguaccgaccggGGCAGCGUGg- -3' miRNA: 3'- -GCcUGCugGACCGGC-----------UCGUCGCACau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 45987 | 0.69 | 0.674928 |
Target: 5'- aCGG-CGACCUGGgCGccguGGCGGCGUu-- -3' miRNA: 3'- -GCCuGCUGGACCgGC----UCGUCGCAcau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 98455 | 0.69 | 0.6846 |
Target: 5'- uCGGACGACCUGGUgGucGCccugaucauGGcCGUGUAc -3' miRNA: 3'- -GCCUGCUGGACCGgCu-CG---------UC-GCACAU- -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 8739 | 0.69 | 0.674928 |
Target: 5'- aCGuGACGACCggaGGCCGugguGGCGGCGg--- -3' miRNA: 3'- -GC-CUGCUGGa--CCGGC----UCGUCGCacau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 104103 | 0.69 | 0.703816 |
Target: 5'- cCGGuCGGCCUGcacguGCCGAGCGGCc---- -3' miRNA: 3'- -GCCuGCUGGAC-----CGGCUCGUCGcacau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 143275 | 0.69 | 0.694231 |
Target: 5'- gGGGCGGCagcuucaagGGCCGAgGCGGCGUc-- -3' miRNA: 3'- gCCUGCUGga-------CCGGCU-CGUCGCAcau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 44842 | 0.69 | 0.655497 |
Target: 5'- aCGGacaGCGACacgGGCCgGAGCAGCGUc-- -3' miRNA: 3'- -GCC---UGCUGga-CCGG-CUCGUCGCAcau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 67450 | 0.69 | 0.6846 |
Target: 5'- -cGACgGACCUgucGGCCGAgGCGGCgGUGUAc -3' miRNA: 3'- gcCUG-CUGGA---CCGGCU-CGUCG-CACAU- -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 59973 | 0.69 | 0.694231 |
Target: 5'- -uGGCGGCUUcgucGGCCGAGCAGCcgGUGa- -3' miRNA: 3'- gcCUGCUGGA----CCGGCUCGUCG--CACau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 193152 | 0.69 | 0.694231 |
Target: 5'- aGGACG-CCUGcuGCUGGGCGGCGa--- -3' miRNA: 3'- gCCUGCuGGAC--CGGCUCGUCGCacau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 82615 | 0.68 | 0.750757 |
Target: 5'- -uGACGACCUGGUCGua-GGUGUGg- -3' miRNA: 3'- gcCUGCUGGACCGGCucgUCGCACau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 95156 | 0.68 | 0.713346 |
Target: 5'- gCGGACGACCUcGuuGAGUGGgGgGUAa -3' miRNA: 3'- -GCCUGCUGGAcCggCUCGUCgCaCAU- -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 119542 | 0.68 | 0.713346 |
Target: 5'- gGGGCGGCCgucuGCUGcAGCAGCaUGUAg -3' miRNA: 3'- gCCUGCUGGac--CGGC-UCGUCGcACAU- -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 111548 | 0.68 | 0.750757 |
Target: 5'- gGGACGgcACCUGGCacuucguGAGCGGCGc--- -3' miRNA: 3'- gCCUGC--UGGACCGg------CUCGUCGCacau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 200839 | 0.68 | 0.713346 |
Target: 5'- gGGACGACCcGGUgGAGUucGGCGUc-- -3' miRNA: 3'- gCCUGCUGGaCCGgCUCG--UCGCAcau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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