Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16210 | 5' | -59.7 | NC_004065.1 | + | 82615 | 0.68 | 0.750757 |
Target: 5'- -uGACGACCUGGUCGua-GGUGUGg- -3' miRNA: 3'- gcCUGCUGGACCGGCucgUCGCACau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 106340 | 0.68 | 0.741527 |
Target: 5'- aGGGCGGCCcGGCgcugcugcaCGGGCAGCGc--- -3' miRNA: 3'- gCCUGCUGGaCCG---------GCUCGUCGCacau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 136672 | 0.68 | 0.713346 |
Target: 5'- aCGGGCGgguCUGGCCG-GCGGCGg--- -3' miRNA: 3'- -GCCUGCug-GACCGGCuCGUCGCacau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 8284 | 0.68 | 0.721869 |
Target: 5'- uCGGACuGAUCggGGCCGcgguguuAGCGGuCGUGUAc -3' miRNA: 3'- -GCCUG-CUGGa-CCGGC-------UCGUC-GCACAU- -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 15498 | 0.68 | 0.732209 |
Target: 5'- aCGGugcgaACGACCUGGCUGGGCucGGUGa--- -3' miRNA: 3'- -GCC-----UGCUGGACCGGCUCG--UCGCacau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 111548 | 0.68 | 0.750757 |
Target: 5'- gGGACGgcACCUGGCacuucguGAGCGGCGc--- -3' miRNA: 3'- gCCUGC--UGGACCGg------CUCGUCGCacau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 119437 | 0.67 | 0.812274 |
Target: 5'- aGGAC--CCUGuGCuUGGGCAGCGUGa- -3' miRNA: 3'- gCCUGcuGGAC-CG-GCUCGUCGCACau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 139718 | 0.67 | 0.786651 |
Target: 5'- cCGGAUgaggGACgUGGCCGAggaacuucGUAGUGUGUu -3' miRNA: 3'- -GCCUG----CUGgACCGGCU--------CGUCGCACAu -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 138917 | 0.67 | 0.795329 |
Target: 5'- uCGGccuACaucaACCUGGCCGAGCucuaCGUGUAc -3' miRNA: 3'- -GCC---UGc---UGGACCGGCUCGuc--GCACAU- -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 66149 | 0.67 | 0.812274 |
Target: 5'- gCGGAcCGGCgccagCUGGCCGAGCGGUu---- -3' miRNA: 3'- -GCCU-GCUG-----GACCGGCUCGUCGcacau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 60179 | 0.67 | 0.812274 |
Target: 5'- aGGuCGACgCUGGCCcgcacGGCGGUGUaGUAg -3' miRNA: 3'- gCCuGCUG-GACCGGc----UCGUCGCA-CAU- -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 63511 | 0.67 | 0.786651 |
Target: 5'- gCGGAUGGCCUcgcccucgcGGCCGuagaucgccGCgAGCGUGUu -3' miRNA: 3'- -GCCUGCUGGA---------CCGGCu--------CG-UCGCACAu -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 24758 | 0.66 | 0.828625 |
Target: 5'- uGGGCGGCCccccguUGGCCG-GC-GCGgGUAu -3' miRNA: 3'- gCCUGCUGG------ACCGGCuCGuCGCaCAU- -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 124978 | 0.66 | 0.828625 |
Target: 5'- aGGGCGGCCagaggcgcgGGUCGuGCAGCGc--- -3' miRNA: 3'- gCCUGCUGGa--------CCGGCuCGUCGCacau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 81185 | 0.66 | 0.851918 |
Target: 5'- uCGcGGCGGCCgccucgUGGCCGAGCgagGGCaUGUu -3' miRNA: 3'- -GC-CUGCUGG------ACCGGCUCG---UCGcACAu -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 120776 | 0.66 | 0.826213 |
Target: 5'- aCGGuACGAUCUGGCagcucaaccccggaCGguacAGCGGCGUGa- -3' miRNA: 3'- -GCC-UGCUGGACCG--------------GC----UCGUCGCACau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 157937 | 0.66 | 0.820528 |
Target: 5'- -uGGCGAUCaGGCCGcGCAGgGUGg- -3' miRNA: 3'- gcCUGCUGGaCCGGCuCGUCgCACau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 85668 | 0.66 | 0.828625 |
Target: 5'- gGGACGAUaCUGGgCGucuGCGGCGccaUGUAc -3' miRNA: 3'- gCCUGCUG-GACCgGCu--CGUCGC---ACAU- -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 94714 | 0.66 | 0.836561 |
Target: 5'- aGGGCGGCUcgagcgGGCCGAagucgGCGGCGg--- -3' miRNA: 3'- gCCUGCUGGa-----CCGGCU-----CGUCGCacau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 103987 | 0.66 | 0.844327 |
Target: 5'- uGGACGugCugaaggUGGgCGAGCGGCucGUGg- -3' miRNA: 3'- gCCUGCugG------ACCgGCUCGUCG--CACau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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