miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16210 5' -59.7 NC_004065.1 + 200216 1.07 0.002873
Target:  5'- cCGGACGACCUGGCCGAGCAGCGUGUAa -3'
miRNA:   3'- -GCCUGCUGGACCGGCUCGUCGCACAU- -5'
16210 5' -59.7 NC_004065.1 + 81712 0.77 0.269913
Target:  5'- uGGGCGACCUggcGGCCGAGguGCugaacaccguGUGUAa -3'
miRNA:   3'- gCCUGCUGGA---CCGGCUCguCG----------CACAU- -5'
16210 5' -59.7 NC_004065.1 + 183274 0.74 0.397756
Target:  5'- uCGGGgGACCUGGaggaGAGCAGCGcGUGc -3'
miRNA:   3'- -GCCUgCUGGACCgg--CUCGUCGCaCAU- -5'
16210 5' -59.7 NC_004065.1 + 6163 0.72 0.529927
Target:  5'- cCGaGAUGGCCgGGCCGGGCGGCcgaGUAc -3'
miRNA:   3'- -GC-CUGCUGGaCCGGCUCGUCGca-CAU- -5'
16210 5' -59.7 NC_004065.1 + 31698 0.71 0.568011
Target:  5'- aGGGgGAUCUGGCCGuuccGCGGCaUGUGc -3'
miRNA:   3'- gCCUgCUGGACCGGCu---CGUCGcACAU- -5'
16210 5' -59.7 NC_004065.1 + 116801 0.7 0.626242
Target:  5'- aCGuACGugUUGGCCGguaccgaccggGGCAGCGUGg- -3'
miRNA:   3'- -GCcUGCugGACCGGC-----------UCGUCGCACau -5'
16210 5' -59.7 NC_004065.1 + 44842 0.69 0.655497
Target:  5'- aCGGacaGCGACacgGGCCgGAGCAGCGUc-- -3'
miRNA:   3'- -GCC---UGCUGga-CCGG-CUCGUCGCAcau -5'
16210 5' -59.7 NC_004065.1 + 45987 0.69 0.674928
Target:  5'- aCGG-CGACCUGGgCGccguGGCGGCGUu-- -3'
miRNA:   3'- -GCCuGCUGGACCgGC----UCGUCGCAcau -5'
16210 5' -59.7 NC_004065.1 + 8739 0.69 0.674928
Target:  5'- aCGuGACGACCggaGGCCGugguGGCGGCGg--- -3'
miRNA:   3'- -GC-CUGCUGGa--CCGGC----UCGUCGCacau -5'
16210 5' -59.7 NC_004065.1 + 67450 0.69 0.6846
Target:  5'- -cGACgGACCUgucGGCCGAgGCGGCgGUGUAc -3'
miRNA:   3'- gcCUG-CUGGA---CCGGCU-CGUCG-CACAU- -5'
16210 5' -59.7 NC_004065.1 + 98455 0.69 0.6846
Target:  5'- uCGGACGACCUGGUgGucGCccugaucauGGcCGUGUAc -3'
miRNA:   3'- -GCCUGCUGGACCGgCu-CG---------UC-GCACAU- -5'
16210 5' -59.7 NC_004065.1 + 59973 0.69 0.694231
Target:  5'- -uGGCGGCUUcgucGGCCGAGCAGCcgGUGa- -3'
miRNA:   3'- gcCUGCUGGA----CCGGCUCGUCG--CACau -5'
16210 5' -59.7 NC_004065.1 + 143275 0.69 0.694231
Target:  5'- gGGGCGGCagcuucaagGGCCGAgGCGGCGUc-- -3'
miRNA:   3'- gCCUGCUGga-------CCGGCU-CGUCGCAcau -5'
16210 5' -59.7 NC_004065.1 + 193152 0.69 0.694231
Target:  5'- aGGACG-CCUGcuGCUGGGCGGCGa--- -3'
miRNA:   3'- gCCUGCuGGAC--CGGCUCGUCGCacau -5'
16210 5' -59.7 NC_004065.1 + 104103 0.69 0.703816
Target:  5'- cCGGuCGGCCUGcacguGCCGAGCGGCc---- -3'
miRNA:   3'- -GCCuGCUGGAC-----CGGCUCGUCGcacau -5'
16210 5' -59.7 NC_004065.1 + 119542 0.68 0.713346
Target:  5'- gGGGCGGCCgucuGCUGcAGCAGCaUGUAg -3'
miRNA:   3'- gCCUGCUGGac--CGGC-UCGUCGcACAU- -5'
16210 5' -59.7 NC_004065.1 + 200839 0.68 0.713346
Target:  5'- gGGACGACCcGGUgGAGUucGGCGUc-- -3'
miRNA:   3'- gCCUGCUGGaCCGgCUCG--UCGCAcau -5'
16210 5' -59.7 NC_004065.1 + 95156 0.68 0.713346
Target:  5'- gCGGACGACCUcGuuGAGUGGgGgGUAa -3'
miRNA:   3'- -GCCUGCUGGAcCggCUCGUCgCaCAU- -5'
16210 5' -59.7 NC_004065.1 + 136672 0.68 0.713346
Target:  5'- aCGGGCGgguCUGGCCG-GCGGCGg--- -3'
miRNA:   3'- -GCCUGCug-GACCGGCuCGUCGCacau -5'
16210 5' -59.7 NC_004065.1 + 8284 0.68 0.721869
Target:  5'- uCGGACuGAUCggGGCCGcgguguuAGCGGuCGUGUAc -3'
miRNA:   3'- -GCCUG-CUGGa-CCGGC-------UCGUC-GCACAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.