miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16210 5' -59.7 NC_004065.1 + 6163 0.72 0.529927
Target:  5'- cCGaGAUGGCCgGGCCGGGCGGCcgaGUAc -3'
miRNA:   3'- -GC-CUGCUGGaCCGGCUCGUCGca-CAU- -5'
16210 5' -59.7 NC_004065.1 + 8284 0.68 0.721869
Target:  5'- uCGGACuGAUCggGGCCGcgguguuAGCGGuCGUGUAc -3'
miRNA:   3'- -GCCUG-CUGGa-CCGGC-------UCGUC-GCACAU- -5'
16210 5' -59.7 NC_004065.1 + 8739 0.69 0.674928
Target:  5'- aCGuGACGACCggaGGCCGugguGGCGGCGg--- -3'
miRNA:   3'- -GC-CUGCUGGa--CCGGC----UCGUCGCacau -5'
16210 5' -59.7 NC_004065.1 + 15498 0.68 0.732209
Target:  5'- aCGGugcgaACGACCUGGCUGGGCucGGUGa--- -3'
miRNA:   3'- -GCC-----UGCUGGACCGGCUCG--UCGCacau -5'
16210 5' -59.7 NC_004065.1 + 24758 0.66 0.828625
Target:  5'- uGGGCGGCCccccguUGGCCG-GC-GCGgGUAu -3'
miRNA:   3'- gCCUGCUGG------ACCGGCuCGuCGCaCAU- -5'
16210 5' -59.7 NC_004065.1 + 27211 0.68 0.759893
Target:  5'- gCGG-CGGuCgUGGUCG-GCAGCGUGUu -3'
miRNA:   3'- -GCCuGCU-GgACCGGCuCGUCGCACAu -5'
16210 5' -59.7 NC_004065.1 + 31698 0.71 0.568011
Target:  5'- aGGGgGAUCUGGCCGuuccGCGGCaUGUGc -3'
miRNA:   3'- gCCUgCUGGACCGGCu---CGUCGcACAU- -5'
16210 5' -59.7 NC_004065.1 + 44842 0.69 0.655497
Target:  5'- aCGGacaGCGACacgGGCCgGAGCAGCGUc-- -3'
miRNA:   3'- -GCC---UGCUGga-CCGG-CUCGUCGCAcau -5'
16210 5' -59.7 NC_004065.1 + 45987 0.69 0.674928
Target:  5'- aCGG-CGACCUGGgCGccguGGCGGCGUu-- -3'
miRNA:   3'- -GCCuGCUGGACCgGC----UCGUCGCAcau -5'
16210 5' -59.7 NC_004065.1 + 59973 0.69 0.694231
Target:  5'- -uGGCGGCUUcgucGGCCGAGCAGCcgGUGa- -3'
miRNA:   3'- gcCUGCUGGA----CCGGCUCGUCG--CACau -5'
16210 5' -59.7 NC_004065.1 + 60179 0.67 0.812274
Target:  5'- aGGuCGACgCUGGCCcgcacGGCGGUGUaGUAg -3'
miRNA:   3'- gCCuGCUG-GACCGGc----UCGUCGCA-CAU- -5'
16210 5' -59.7 NC_004065.1 + 63511 0.67 0.786651
Target:  5'- gCGGAUGGCCUcgcccucgcGGCCGuagaucgccGCgAGCGUGUu -3'
miRNA:   3'- -GCCUGCUGGA---------CCGGCu--------CG-UCGCACAu -5'
16210 5' -59.7 NC_004065.1 + 66149 0.67 0.812274
Target:  5'- gCGGAcCGGCgccagCUGGCCGAGCGGUu---- -3'
miRNA:   3'- -GCCU-GCUG-----GACCGGCUCGUCGcacau -5'
16210 5' -59.7 NC_004065.1 + 67450 0.69 0.6846
Target:  5'- -cGACgGACCUgucGGCCGAgGCGGCgGUGUAc -3'
miRNA:   3'- gcCUG-CUGGA---CCGGCU-CGUCG-CACAU- -5'
16210 5' -59.7 NC_004065.1 + 79569 0.66 0.851918
Target:  5'- gCGG-CGcuuCCUGGCCGAGguGgccgaGUGUc -3'
miRNA:   3'- -GCCuGCu--GGACCGGCUCguCg----CACAu -5'
16210 5' -59.7 NC_004065.1 + 81185 0.66 0.851918
Target:  5'- uCGcGGCGGCCgccucgUGGCCGAGCgagGGCaUGUu -3'
miRNA:   3'- -GC-CUGCUGG------ACCGGCUCG---UCGcACAu -5'
16210 5' -59.7 NC_004065.1 + 81712 0.77 0.269913
Target:  5'- uGGGCGACCUggcGGCCGAGguGCugaacaccguGUGUAa -3'
miRNA:   3'- gCCUGCUGGA---CCGGCUCguCG----------CACAU- -5'
16210 5' -59.7 NC_004065.1 + 82615 0.68 0.750757
Target:  5'- -uGACGACCUGGUCGua-GGUGUGg- -3'
miRNA:   3'- gcCUGCUGGACCGGCucgUCGCACau -5'
16210 5' -59.7 NC_004065.1 + 85668 0.66 0.828625
Target:  5'- gGGACGAUaCUGGgCGucuGCGGCGccaUGUAc -3'
miRNA:   3'- gCCUGCUG-GACCgGCu--CGUCGC---ACAU- -5'
16210 5' -59.7 NC_004065.1 + 94714 0.66 0.836561
Target:  5'- aGGGCGGCUcgagcgGGCCGAagucgGCGGCGg--- -3'
miRNA:   3'- gCCUGCUGGa-----CCGGCU-----CGUCGCacau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.