miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16210 5' -59.7 NC_004065.1 + 200216 1.07 0.002873
Target:  5'- cCGGACGACCUGGCCGAGCAGCGUGUAa -3'
miRNA:   3'- -GCCUGCUGGACCGGCUCGUCGCACAU- -5'
16210 5' -59.7 NC_004065.1 + 139718 0.67 0.786651
Target:  5'- cCGGAUgaggGACgUGGCCGAggaacuucGUAGUGUGUu -3'
miRNA:   3'- -GCCUG----CUGgACCGGCU--------CGUCGCACAu -5'
16210 5' -59.7 NC_004065.1 + 138917 0.67 0.795329
Target:  5'- uCGGccuACaucaACCUGGCCGAGCucuaCGUGUAc -3'
miRNA:   3'- -GCC---UGc---UGGACCGGCUCGuc--GCACAU- -5'
16210 5' -59.7 NC_004065.1 + 66149 0.67 0.812274
Target:  5'- gCGGAcCGGCgccagCUGGCCGAGCGGUu---- -3'
miRNA:   3'- -GCCU-GCUG-----GACCGGCUCGUCGcacau -5'
16210 5' -59.7 NC_004065.1 + 60179 0.67 0.812274
Target:  5'- aGGuCGACgCUGGCCcgcacGGCGGUGUaGUAg -3'
miRNA:   3'- gCCuGCUG-GACCGGc----UCGUCGCA-CAU- -5'
16210 5' -59.7 NC_004065.1 + 120776 0.66 0.826213
Target:  5'- aCGGuACGAUCUGGCagcucaaccccggaCGguacAGCGGCGUGa- -3'
miRNA:   3'- -GCC-UGCUGGACCG--------------GC----UCGUCGCACau -5'
16210 5' -59.7 NC_004065.1 + 24758 0.66 0.828625
Target:  5'- uGGGCGGCCccccguUGGCCG-GC-GCGgGUAu -3'
miRNA:   3'- gCCUGCUGG------ACCGGCuCGuCGCaCAU- -5'
16210 5' -59.7 NC_004065.1 + 124978 0.66 0.828625
Target:  5'- aGGGCGGCCagaggcgcgGGUCGuGCAGCGc--- -3'
miRNA:   3'- gCCUGCUGGa--------CCGGCuCGUCGCacau -5'
16210 5' -59.7 NC_004065.1 + 81185 0.66 0.851918
Target:  5'- uCGcGGCGGCCgccucgUGGCCGAGCgagGGCaUGUu -3'
miRNA:   3'- -GC-CUGCUGG------ACCGGCUCG---UCGcACAu -5'
16210 5' -59.7 NC_004065.1 + 63511 0.67 0.786651
Target:  5'- gCGGAUGGCCUcgcccucgcGGCCGuagaucgccGCgAGCGUGUu -3'
miRNA:   3'- -GCCUGCUGGA---------CCGGCu--------CG-UCGCACAu -5'
16210 5' -59.7 NC_004065.1 + 111548 0.68 0.750757
Target:  5'- gGGACGgcACCUGGCacuucguGAGCGGCGc--- -3'
miRNA:   3'- gCCUGC--UGGACCGg------CUCGUCGCacau -5'
16210 5' -59.7 NC_004065.1 + 116801 0.7 0.626242
Target:  5'- aCGuACGugUUGGCCGguaccgaccggGGCAGCGUGg- -3'
miRNA:   3'- -GCcUGCugGACCGGC-----------UCGUCGCACau -5'
16210 5' -59.7 NC_004065.1 + 44842 0.69 0.655497
Target:  5'- aCGGacaGCGACacgGGCCgGAGCAGCGUc-- -3'
miRNA:   3'- -GCC---UGCUGga-CCGG-CUCGUCGCAcau -5'
16210 5' -59.7 NC_004065.1 + 45987 0.69 0.674928
Target:  5'- aCGG-CGACCUGGgCGccguGGCGGCGUu-- -3'
miRNA:   3'- -GCCuGCUGGACCgGC----UCGUCGCAcau -5'
16210 5' -59.7 NC_004065.1 + 67450 0.69 0.6846
Target:  5'- -cGACgGACCUgucGGCCGAgGCGGCgGUGUAc -3'
miRNA:   3'- gcCUG-CUGGA---CCGGCU-CGUCG-CACAU- -5'
16210 5' -59.7 NC_004065.1 + 59973 0.69 0.694231
Target:  5'- -uGGCGGCUUcgucGGCCGAGCAGCcgGUGa- -3'
miRNA:   3'- gcCUGCUGGA----CCGGCUCGUCG--CACau -5'
16210 5' -59.7 NC_004065.1 + 95156 0.68 0.713346
Target:  5'- gCGGACGACCUcGuuGAGUGGgGgGUAa -3'
miRNA:   3'- -GCCUGCUGGAcCggCUCGUCgCaCAU- -5'
16210 5' -59.7 NC_004065.1 + 200839 0.68 0.713346
Target:  5'- gGGACGACCcGGUgGAGUucGGCGUc-- -3'
miRNA:   3'- gCCUGCUGGaCCGgCUCG--UCGCAcau -5'
16210 5' -59.7 NC_004065.1 + 82615 0.68 0.750757
Target:  5'- -uGACGACCUGGUCGua-GGUGUGg- -3'
miRNA:   3'- gcCUGCUGGACCGGCucgUCGCACau -5'
16210 5' -59.7 NC_004065.1 + 79569 0.66 0.851918
Target:  5'- gCGG-CGcuuCCUGGCCGAGguGgccgaGUGUc -3'
miRNA:   3'- -GCCuGCu--GGACCGGCUCguCg----CACAu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.