Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16210 | 5' | -59.7 | NC_004065.1 | + | 6163 | 0.72 | 0.529927 |
Target: 5'- cCGaGAUGGCCgGGCCGGGCGGCcgaGUAc -3' miRNA: 3'- -GC-CUGCUGGaCCGGCUCGUCGca-CAU- -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 157937 | 0.66 | 0.820528 |
Target: 5'- -uGGCGAUCaGGCCGcGCAGgGUGg- -3' miRNA: 3'- gcCUGCUGGaCCGGCuCGUCgCACau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 94714 | 0.66 | 0.836561 |
Target: 5'- aGGGCGGCUcgagcgGGCCGAagucgGCGGCGg--- -3' miRNA: 3'- gCCUGCUGGa-----CCGGCU-----CGUCGCacau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 79569 | 0.66 | 0.851918 |
Target: 5'- gCGG-CGcuuCCUGGCCGAGguGgccgaGUGUc -3' miRNA: 3'- -GCCuGCu--GGACCGGCUCguCg----CACAu -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 193152 | 0.69 | 0.694231 |
Target: 5'- aGGACG-CCUGcuGCUGGGCGGCGa--- -3' miRNA: 3'- gCCUGCuGGAC--CGGCUCGUCGCacau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 143275 | 0.69 | 0.694231 |
Target: 5'- gGGGCGGCagcuucaagGGCCGAgGCGGCGUc-- -3' miRNA: 3'- gCCUGCUGga-------CCGGCU-CGUCGCAcau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 119542 | 0.68 | 0.713346 |
Target: 5'- gGGGCGGCCgucuGCUGcAGCAGCaUGUAg -3' miRNA: 3'- gCCUGCUGGac--CGGC-UCGUCGcACAU- -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 136672 | 0.68 | 0.713346 |
Target: 5'- aCGGGCGgguCUGGCCG-GCGGCGg--- -3' miRNA: 3'- -GCCUGCug-GACCGGCuCGUCGCacau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 81712 | 0.77 | 0.269913 |
Target: 5'- uGGGCGACCUggcGGCCGAGguGCugaacaccguGUGUAa -3' miRNA: 3'- gCCUGCUGGA---CCGGCUCguCG----------CACAU- -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 119437 | 0.67 | 0.812274 |
Target: 5'- aGGAC--CCUGuGCuUGGGCAGCGUGa- -3' miRNA: 3'- gCCUGcuGGAC-CG-GCUCGUCGCACau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 170355 | 0.68 | 0.732209 |
Target: 5'- uCGGACGACgaGGaCGAGgUGGCGUGc- -3' miRNA: 3'- -GCCUGCUGgaCCgGCUC-GUCGCACau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 15498 | 0.68 | 0.732209 |
Target: 5'- aCGGugcgaACGACCUGGCUGGGCucGGUGa--- -3' miRNA: 3'- -GCC-----UGCUGGACCGGCUCG--UCGCacau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 31698 | 0.71 | 0.568011 |
Target: 5'- aGGGgGAUCUGGCCGuuccGCGGCaUGUGc -3' miRNA: 3'- gCCUgCUGGACCGGCu---CGUCGcACAU- -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 106340 | 0.68 | 0.741527 |
Target: 5'- aGGGCGGCCcGGCgcugcugcaCGGGCAGCGc--- -3' miRNA: 3'- gCCUGCUGGaCCG---------GCUCGUCGCacau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 8739 | 0.69 | 0.674928 |
Target: 5'- aCGuGACGACCggaGGCCGugguGGCGGCGg--- -3' miRNA: 3'- -GC-CUGCUGGa--CCGGC----UCGUCGCacau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 8284 | 0.68 | 0.721869 |
Target: 5'- uCGGACuGAUCggGGCCGcgguguuAGCGGuCGUGUAc -3' miRNA: 3'- -GCCUG-CUGGa-CCGGC-------UCGUC-GCACAU- -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 27211 | 0.68 | 0.759893 |
Target: 5'- gCGG-CGGuCgUGGUCG-GCAGCGUGUu -3' miRNA: 3'- -GCCuGCU-GgACCGGCuCGUCGCACAu -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 85668 | 0.66 | 0.828625 |
Target: 5'- gGGACGAUaCUGGgCGucuGCGGCGccaUGUAc -3' miRNA: 3'- gCCUGCUG-GACCgGCu--CGUCGC---ACAU- -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 98455 | 0.69 | 0.6846 |
Target: 5'- uCGGACGACCUGGUgGucGCccugaucauGGcCGUGUAc -3' miRNA: 3'- -GCCUGCUGGACCGgCu-CG---------UC-GCACAU- -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 104103 | 0.69 | 0.703816 |
Target: 5'- cCGGuCGGCCUGcacguGCCGAGCGGCc---- -3' miRNA: 3'- -GCCuGCUGGAC-----CGGCUCGUCGcacau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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