Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16210 | 5' | -59.7 | NC_004065.1 | + | 193152 | 0.69 | 0.694231 |
Target: 5'- aGGACG-CCUGcuGCUGGGCGGCGa--- -3' miRNA: 3'- gCCUGCuGGAC--CGGCUCGUCGCacau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 119437 | 0.67 | 0.812274 |
Target: 5'- aGGAC--CCUGuGCuUGGGCAGCGUGa- -3' miRNA: 3'- gCCUGcuGGAC-CG-GCUCGUCGCACau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 81185 | 0.66 | 0.851918 |
Target: 5'- uCGcGGCGGCCgccucgUGGCCGAGCgagGGCaUGUu -3' miRNA: 3'- -GC-CUGCUGG------ACCGGCUCG---UCGcACAu -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 200839 | 0.68 | 0.713346 |
Target: 5'- gGGACGACCcGGUgGAGUucGGCGUc-- -3' miRNA: 3'- gCCUGCUGGaCCGgCUCG--UCGCAcau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 95156 | 0.68 | 0.713346 |
Target: 5'- gCGGACGACCUcGuuGAGUGGgGgGUAa -3' miRNA: 3'- -GCCUGCUGGAcCggCUCGUCgCaCAU- -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 59973 | 0.69 | 0.694231 |
Target: 5'- -uGGCGGCUUcgucGGCCGAGCAGCcgGUGa- -3' miRNA: 3'- gcCUGCUGGA----CCGGCUCGUCG--CACau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 67450 | 0.69 | 0.6846 |
Target: 5'- -cGACgGACCUgucGGCCGAgGCGGCgGUGUAc -3' miRNA: 3'- gcCUG-CUGGA---CCGGCU-CGUCG-CACAU- -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 45987 | 0.69 | 0.674928 |
Target: 5'- aCGG-CGACCUGGgCGccguGGCGGCGUu-- -3' miRNA: 3'- -GCCuGCUGGACCgGC----UCGUCGCAcau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 44842 | 0.69 | 0.655497 |
Target: 5'- aCGGacaGCGACacgGGCCgGAGCAGCGUc-- -3' miRNA: 3'- -GCC---UGCUGga-CCGG-CUCGUCGCAcau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 116801 | 0.7 | 0.626242 |
Target: 5'- aCGuACGugUUGGCCGguaccgaccggGGCAGCGUGg- -3' miRNA: 3'- -GCcUGCugGACCGGC-----------UCGUCGCACau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 82615 | 0.68 | 0.750757 |
Target: 5'- -uGACGACCUGGUCGua-GGUGUGg- -3' miRNA: 3'- gcCUGCUGGACCGGCucgUCGCACau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 111548 | 0.68 | 0.750757 |
Target: 5'- gGGACGgcACCUGGCacuucguGAGCGGCGc--- -3' miRNA: 3'- gCCUGC--UGGACCGg------CUCGUCGCacau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 124978 | 0.66 | 0.828625 |
Target: 5'- aGGGCGGCCagaggcgcgGGUCGuGCAGCGc--- -3' miRNA: 3'- gCCUGCUGGa--------CCGGCuCGUCGCacau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 24758 | 0.66 | 0.828625 |
Target: 5'- uGGGCGGCCccccguUGGCCG-GC-GCGgGUAu -3' miRNA: 3'- gCCUGCUGG------ACCGGCuCGuCGCaCAU- -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 60179 | 0.67 | 0.812274 |
Target: 5'- aGGuCGACgCUGGCCcgcacGGCGGUGUaGUAg -3' miRNA: 3'- gCCuGCUG-GACCGGc----UCGUCGCA-CAU- -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 120776 | 0.66 | 0.826213 |
Target: 5'- aCGGuACGAUCUGGCagcucaaccccggaCGguacAGCGGCGUGa- -3' miRNA: 3'- -GCC-UGCUGGACCG--------------GC----UCGUCGCACau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 66149 | 0.67 | 0.812274 |
Target: 5'- gCGGAcCGGCgccagCUGGCCGAGCGGUu---- -3' miRNA: 3'- -GCCU-GCUG-----GACCGGCUCGUCGcacau -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 138917 | 0.67 | 0.795329 |
Target: 5'- uCGGccuACaucaACCUGGCCGAGCucuaCGUGUAc -3' miRNA: 3'- -GCC---UGc---UGGACCGGCUCGuc--GCACAU- -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 139718 | 0.67 | 0.786651 |
Target: 5'- cCGGAUgaggGACgUGGCCGAggaacuucGUAGUGUGUu -3' miRNA: 3'- -GCCUG----CUGgACCGGCU--------CGUCGCACAu -5' |
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16210 | 5' | -59.7 | NC_004065.1 | + | 63511 | 0.67 | 0.786651 |
Target: 5'- gCGGAUGGCCUcgcccucgcGGCCGuagaucgccGCgAGCGUGUu -3' miRNA: 3'- -GCCUGCUGGA---------CCGGCu--------CG-UCGCACAu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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