miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16211 3' -60.7 NC_004065.1 + 133826 0.66 0.817344
Target:  5'- -uUGCGGCGGAGUguauaggagaCGUGGUuucGCUGg -3'
miRNA:   3'- guACGCUGCCUCGag--------GCGCCG---CGACa -5'
16211 3' -60.7 NC_004065.1 + 56540 0.66 0.817344
Target:  5'- --aGUGGCGGcGacaCCGCaGGCGCUGa -3'
miRNA:   3'- guaCGCUGCCuCga-GGCG-CCGCGACa -5'
16211 3' -60.7 NC_004065.1 + 48101 0.66 0.817344
Target:  5'- -cUGUGGCGGcGGCgguggCgGCGGCGgUGg -3'
miRNA:   3'- guACGCUGCC-UCGa----GgCGCCGCgACa -5'
16211 3' -60.7 NC_004065.1 + 103990 0.66 0.817344
Target:  5'- aCGUGCugaagGugGGcgAGCggcUCGUGGCGCUGg -3'
miRNA:   3'- -GUACG-----CugCC--UCGa--GGCGCCGCGACa -5'
16211 3' -60.7 NC_004065.1 + 94424 0.66 0.809085
Target:  5'- --cGUGACGGccguCUCCcaGCGGCGCgUGUg -3'
miRNA:   3'- guaCGCUGCCuc--GAGG--CGCCGCG-ACA- -5'
16211 3' -60.7 NC_004065.1 + 192904 0.66 0.800681
Target:  5'- -cUGCGgaucuGCGGAGCgggggCCGgcucuuugaUGGCGCUGa -3'
miRNA:   3'- guACGC-----UGCCUCGa----GGC---------GCCGCGACa -5'
16211 3' -60.7 NC_004065.1 + 31525 0.66 0.800681
Target:  5'- aCGUGCcGCGGGGCUaCCcCGGCauggagcuGCUGg -3'
miRNA:   3'- -GUACGcUGCCUCGA-GGcGCCG--------CGACa -5'
16211 3' -60.7 NC_004065.1 + 99560 0.66 0.79214
Target:  5'- --cGCGGCGGAcggCCGUGGUGCg-- -3'
miRNA:   3'- guaCGCUGCCUcgaGGCGCCGCGaca -5'
16211 3' -60.7 NC_004065.1 + 103502 0.66 0.79214
Target:  5'- --cGCuGAUGGAGCacgggacgaUCgCGCGGCGCaUGg -3'
miRNA:   3'- guaCG-CUGCCUCG---------AG-GCGCCGCG-ACa -5'
16211 3' -60.7 NC_004065.1 + 191173 0.66 0.79214
Target:  5'- --gGCGAUGG-GCgucCCGCGGCagauguggagGCUGg -3'
miRNA:   3'- guaCGCUGCCuCGa--GGCGCCG----------CGACa -5'
16211 3' -60.7 NC_004065.1 + 203065 0.66 0.79214
Target:  5'- --gGCGAgcucCGGAGCccgCCGCGGcCGCcGg -3'
miRNA:   3'- guaCGCU----GCCUCGa--GGCGCC-GCGaCa -5'
16211 3' -60.7 NC_004065.1 + 78665 0.66 0.79214
Target:  5'- --aGCGcaGCGGccGGCgCCGCGGCGCc-- -3'
miRNA:   3'- guaCGC--UGCC--UCGaGGCGCCGCGaca -5'
16211 3' -60.7 NC_004065.1 + 21038 0.66 0.78347
Target:  5'- gGUGCGAgauaauauGCUCCGCGG-GCUGg -3'
miRNA:   3'- gUACGCUgccu----CGAGGCGCCgCGACa -5'
16211 3' -60.7 NC_004065.1 + 104129 0.66 0.78347
Target:  5'- cCAUgGCGAgCGGAuccucgucgucGCcuUCCGCGGCGgUGUc -3'
miRNA:   3'- -GUA-CGCU-GCCU-----------CG--AGGCGCCGCgACA- -5'
16211 3' -60.7 NC_004065.1 + 28498 0.66 0.774678
Target:  5'- --aGCGccGCGGAGCUCCGUcgcaugGGacuGCUGa -3'
miRNA:   3'- guaCGC--UGCCUCGAGGCG------CCg--CGACa -5'
16211 3' -60.7 NC_004065.1 + 35459 0.67 0.765771
Target:  5'- uCGUGCuGGuCGGAGC-CCGCGGaaCGgUGUa -3'
miRNA:   3'- -GUACG-CU-GCCUCGaGGCGCC--GCgACA- -5'
16211 3' -60.7 NC_004065.1 + 152140 0.67 0.765771
Target:  5'- cCGUGCGACaGGAuCUCCGCcauGGUcaGCUGc -3'
miRNA:   3'- -GUACGCUG-CCUcGAGGCG---CCG--CGACa -5'
16211 3' -60.7 NC_004065.1 + 139868 0.67 0.756758
Target:  5'- --gGCGGCGGAGC-CgGCGGCa---- -3'
miRNA:   3'- guaCGCUGCCUCGaGgCGCCGcgaca -5'
16211 3' -60.7 NC_004065.1 + 120498 0.67 0.756758
Target:  5'- uCGUGCccgggguaGACGGugaccuGCUCCaCGGCGUUGa -3'
miRNA:   3'- -GUACG--------CUGCCu-----CGAGGcGCCGCGACa -5'
16211 3' -60.7 NC_004065.1 + 154156 0.67 0.756758
Target:  5'- --gGUGGCGGcGGCggCgGCGGCgGCUGUu -3'
miRNA:   3'- guaCGCUGCC-UCGa-GgCGCCG-CGACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.