miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16212 3' -59.6 NC_004065.1 + 93988 0.66 0.875231
Target:  5'- cGGCACCCUGGccggcuuuucgggGUCCCGGUuccGGCuucguugcucccuGCCc -3'
miRNA:   3'- -UUGUGGGGCCa------------CAGGGCCAu--CUG-------------CGG- -5'
16212 3' -59.6 NC_004065.1 + 188548 0.66 0.873859
Target:  5'- cGACGCCCCGGcgcacgcUgcuuaccauagucucGUCCCGGcccaaaaGGACGUCc -3'
miRNA:   3'- -UUGUGGGGCC-------A---------------CAGGGCCa------UCUGCGG- -5'
16212 3' -59.6 NC_004065.1 + 201182 0.66 0.871787
Target:  5'- cGACACCaagCGGcgcGUCCCGGcucGGGCGgCg -3'
miRNA:   3'- -UUGUGGg--GCCa--CAGGGCCa--UCUGCgG- -5'
16212 3' -59.6 NC_004065.1 + 47298 0.66 0.871787
Target:  5'- gGugGCCCCGGcGUCgCCcGU-GAgGCCg -3'
miRNA:   3'- -UugUGGGGCCaCAG-GGcCAuCUgCGG- -5'
16212 3' -59.6 NC_004065.1 + 30169 0.66 0.864754
Target:  5'- cGGCACCgaCGaGUGcCUgcggCGGUGGugGCCg -3'
miRNA:   3'- -UUGUGGg-GC-CACaGG----GCCAUCugCGG- -5'
16212 3' -59.6 NC_004065.1 + 168832 0.66 0.864754
Target:  5'- -uCGCCgCGG-GUCCUGGccuACGCCg -3'
miRNA:   3'- uuGUGGgGCCaCAGGGCCaucUGCGG- -5'
16212 3' -59.6 NC_004065.1 + 29679 0.66 0.857534
Target:  5'- gGACGCCCaGGUccucguucuuGUCaucgCCGGUcgagcggcGGACGCCg -3'
miRNA:   3'- -UUGUGGGgCCA----------CAG----GGCCA--------UCUGCGG- -5'
16212 3' -59.6 NC_004065.1 + 186846 0.66 0.857534
Target:  5'- gAGgAUCCCGaGUGUgagauguuuaUCaUGGUGGACGCCg -3'
miRNA:   3'- -UUgUGGGGC-CACA----------GG-GCCAUCUGCGG- -5'
16212 3' -59.6 NC_004065.1 + 207986 0.66 0.850131
Target:  5'- gGAUACCgCGGccUG-CCCGGggccGugGCCg -3'
miRNA:   3'- -UUGUGGgGCC--ACaGGGCCau--CugCGG- -5'
16212 3' -59.6 NC_004065.1 + 41105 0.66 0.850131
Target:  5'- gAGCGCCaaGGUGaaaCCCGG-AGAC-CCg -3'
miRNA:   3'- -UUGUGGggCCACa--GGGCCaUCUGcGG- -5'
16212 3' -59.6 NC_004065.1 + 71425 0.66 0.834799
Target:  5'- aAACAUCCCGGc--UCUGGUgGGugGCCc -3'
miRNA:   3'- -UUGUGGGGCCacaGGGCCA-UCugCGG- -5'
16212 3' -59.6 NC_004065.1 + 184910 0.66 0.834799
Target:  5'- gGGCGCCCgGGUGgCUCGGga-GCgGCCg -3'
miRNA:   3'- -UUGUGGGgCCACaGGGCCaucUG-CGG- -5'
16212 3' -59.6 NC_004065.1 + 170244 0.66 0.834799
Target:  5'- --uGCCCCGGUaUCgUGGccGugGCCg -3'
miRNA:   3'- uugUGGGGCCAcAGgGCCauCugCGG- -5'
16212 3' -59.6 NC_004065.1 + 63453 0.67 0.826883
Target:  5'- uGCAUCCgagcgGGUGgacgaCCCGGUgcagccgccAGGCGCCg -3'
miRNA:   3'- uUGUGGGg----CCACa----GGGCCA---------UCUGCGG- -5'
16212 3' -59.6 NC_004065.1 + 139832 0.67 0.826883
Target:  5'- uACGgCCUGGaGUCCCGGgAGGCGg- -3'
miRNA:   3'- uUGUgGGGCCaCAGGGCCaUCUGCgg -5'
16212 3' -59.6 NC_004065.1 + 1157 0.67 0.818807
Target:  5'- uGCGCCgCGGUgGUCCCcauuGUGucgucGGCGCCg -3'
miRNA:   3'- uUGUGGgGCCA-CAGGGc---CAU-----CUGCGG- -5'
16212 3' -59.6 NC_004065.1 + 102035 0.67 0.818807
Target:  5'- -cCACCUCGGUGaCCCGcGgcGgccgggcguuaGCGCCg -3'
miRNA:   3'- uuGUGGGGCCACaGGGC-CauC-----------UGCGG- -5'
16212 3' -59.6 NC_004065.1 + 182438 0.67 0.81058
Target:  5'- gGGCAgCCgGGgGUCCUGGU-GACGUa -3'
miRNA:   3'- -UUGUgGGgCCaCAGGGCCAuCUGCGg -5'
16212 3' -59.6 NC_004065.1 + 123756 0.67 0.799668
Target:  5'- cAGCACCUCGGUGcgccgcgCgCCGGUcgccugucggacccAGGCGUCc -3'
miRNA:   3'- -UUGUGGGGCCACa------G-GGCCA--------------UCUGCGG- -5'
16212 3' -59.6 NC_004065.1 + 158268 0.67 0.785055
Target:  5'- cGACGCCaacaCGGUcaccgaCCGGUAG-CGCCg -3'
miRNA:   3'- -UUGUGGg---GCCAcag---GGCCAUCuGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.