miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16212 3' -59.6 NC_004065.1 + 201639 1.1 0.002066
Target:  5'- gAACACCCCGGUGUCCCGGUAGACGCCg -3'
miRNA:   3'- -UUGUGGGGCCACAGGGCCAUCUGCGG- -5'
16212 3' -59.6 NC_004065.1 + 129568 0.76 0.352215
Target:  5'- --gAUgCCGGUGUUCCGGguggAGAUGCCg -3'
miRNA:   3'- uugUGgGGCCACAGGGCCa---UCUGCGG- -5'
16212 3' -59.6 NC_004065.1 + 163289 0.73 0.475118
Target:  5'- cGACGCCgCCGGgGUCCgaCGGcacGGGCGCCa -3'
miRNA:   3'- -UUGUGG-GGCCaCAGG--GCCa--UCUGCGG- -5'
16212 3' -59.6 NC_004065.1 + 199559 0.73 0.484071
Target:  5'- cGCGCCCCaucGUG-CCgCGGUccAGACGCCg -3'
miRNA:   3'- uUGUGGGGc--CACaGG-GCCA--UCUGCGG- -5'
16212 3' -59.6 NC_004065.1 + 194596 0.72 0.502213
Target:  5'- gGACACCUCGaagacaagccGUcGUCCCGGUAcucucccacGGCGCCg -3'
miRNA:   3'- -UUGUGGGGC----------CA-CAGGGCCAU---------CUGCGG- -5'
16212 3' -59.6 NC_004065.1 + 27487 0.72 0.511396
Target:  5'- -cCugCCCGGUGUagugagCGGUcaGGACGCCa -3'
miRNA:   3'- uuGugGGGCCACAgg----GCCA--UCUGCGG- -5'
16212 3' -59.6 NC_004065.1 + 17325 0.72 0.529029
Target:  5'- -cCGCCuucgaguCCGGUGUCCuCGGUcuGAUGCCg -3'
miRNA:   3'- uuGUGG-------GGCCACAGG-GCCAu-CUGCGG- -5'
16212 3' -59.6 NC_004065.1 + 117116 0.71 0.567783
Target:  5'- cGCGCCCUGGUGUCgcaccugauCCGGacggAGACggGCCu -3'
miRNA:   3'- uUGUGGGGCCACAG---------GGCCa---UCUG--CGG- -5'
16212 3' -59.6 NC_004065.1 + 65917 0.71 0.567783
Target:  5'- aGACGCCCCGG--UCUCGGUuaccGuCGCCg -3'
miRNA:   3'- -UUGUGGGGCCacAGGGCCAu---CuGCGG- -5'
16212 3' -59.6 NC_004065.1 + 71957 0.7 0.635296
Target:  5'- cGACGCCgCCGGUGgagccgggcagCCCGGaggcGACGCa -3'
miRNA:   3'- -UUGUGG-GGCCACa----------GGGCCau--CUGCGg -5'
16212 3' -59.6 NC_004065.1 + 44273 0.7 0.635296
Target:  5'- aGACGCCCCacauGUGggCCCGGUcGAucCGCCu -3'
miRNA:   3'- -UUGUGGGGc---CACa-GGGCCAuCU--GCGG- -5'
16212 3' -59.6 NC_004065.1 + 121599 0.69 0.683571
Target:  5'- cGACGgCCCGGgacccCCCGGUagggcaGGAUGCCc -3'
miRNA:   3'- -UUGUgGGGCCaca--GGGCCA------UCUGCGG- -5'
16212 3' -59.6 NC_004065.1 + 84932 0.69 0.721547
Target:  5'- gAACAUCgUGGUGUUCuCGGUGGcgGCGCa -3'
miRNA:   3'- -UUGUGGgGCCACAGG-GCCAUC--UGCGg -5'
16212 3' -59.6 NC_004065.1 + 185199 0.68 0.730889
Target:  5'- cGCugUCC-GUGUCgCGGUGGugGCg -3'
miRNA:   3'- uUGugGGGcCACAGgGCCAUCugCGg -5'
16212 3' -59.6 NC_004065.1 + 209342 0.68 0.74842
Target:  5'- gGACugCCCGGUG-CCagcggcgUGGUggaAGACGCg -3'
miRNA:   3'- -UUGugGGGCCACaGG-------GCCA---UCUGCGg -5'
16212 3' -59.6 NC_004065.1 + 72044 0.68 0.752981
Target:  5'- uGCACCCgGaguacGUGUaCgccaucacgacccagCCGGUGGACGCCa -3'
miRNA:   3'- uUGUGGGgC-----CACA-G---------------GGCCAUCUGCGG- -5'
16212 3' -59.6 NC_004065.1 + 169620 0.68 0.767411
Target:  5'- cAAgGCCCUGGaGUCCCuGGUccgcGACGCg -3'
miRNA:   3'- -UUgUGGGGCCaCAGGG-CCAu---CUGCGg -5'
16212 3' -59.6 NC_004065.1 + 108731 0.68 0.767411
Target:  5'- cGCugCCCGGUGagcaUCCUGGc-GAUGCg -3'
miRNA:   3'- uUGugGGGCCAC----AGGGCCauCUGCGg -5'
16212 3' -59.6 NC_004065.1 + 140986 0.68 0.77629
Target:  5'- cAACAUCCUGGUGgccaCCGGcAGcUGCCu -3'
miRNA:   3'- -UUGUGGGGCCACag--GGCCaUCuGCGG- -5'
16212 3' -59.6 NC_004065.1 + 53538 0.67 0.785055
Target:  5'- gGACACCCacc-GUCCCGGUGccucCGCCu -3'
miRNA:   3'- -UUGUGGGgccaCAGGGCCAUcu--GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.