miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16212 3' -59.6 NC_004065.1 + 209342 0.68 0.74842
Target:  5'- gGACugCCCGGUG-CCagcggcgUGGUggaAGACGCg -3'
miRNA:   3'- -UUGugGGGCCACaGG-------GCCA---UCUGCGg -5'
16212 3' -59.6 NC_004065.1 + 207986 0.66 0.850131
Target:  5'- gGAUACCgCGGccUG-CCCGGggccGugGCCg -3'
miRNA:   3'- -UUGUGGgGCC--ACaGGGCCau--CugCGG- -5'
16212 3' -59.6 NC_004065.1 + 201639 1.1 0.002066
Target:  5'- gAACACCCCGGUGUCCCGGUAGACGCCg -3'
miRNA:   3'- -UUGUGGGGCCACAGGGCCAUCUGCGG- -5'
16212 3' -59.6 NC_004065.1 + 201182 0.66 0.871787
Target:  5'- cGACACCaagCGGcgcGUCCCGGcucGGGCGgCg -3'
miRNA:   3'- -UUGUGGg--GCCa--CAGGGCCa--UCUGCgG- -5'
16212 3' -59.6 NC_004065.1 + 199559 0.73 0.484071
Target:  5'- cGCGCCCCaucGUG-CCgCGGUccAGACGCCg -3'
miRNA:   3'- uUGUGGGGc--CACaGG-GCCA--UCUGCGG- -5'
16212 3' -59.6 NC_004065.1 + 194596 0.72 0.502213
Target:  5'- gGACACCUCGaagacaagccGUcGUCCCGGUAcucucccacGGCGCCg -3'
miRNA:   3'- -UUGUGGGGC----------CA-CAGGGCCAU---------CUGCGG- -5'
16212 3' -59.6 NC_004065.1 + 188548 0.66 0.873859
Target:  5'- cGACGCCCCGGcgcacgcUgcuuaccauagucucGUCCCGGcccaaaaGGACGUCc -3'
miRNA:   3'- -UUGUGGGGCC-------A---------------CAGGGCCa------UCUGCGG- -5'
16212 3' -59.6 NC_004065.1 + 186846 0.66 0.857534
Target:  5'- gAGgAUCCCGaGUGUgagauguuuaUCaUGGUGGACGCCg -3'
miRNA:   3'- -UUgUGGGGC-CACA----------GG-GCCAUCUGCGG- -5'
16212 3' -59.6 NC_004065.1 + 185199 0.68 0.730889
Target:  5'- cGCugUCC-GUGUCgCGGUGGugGCg -3'
miRNA:   3'- uUGugGGGcCACAGgGCCAUCugCGg -5'
16212 3' -59.6 NC_004065.1 + 184910 0.66 0.834799
Target:  5'- gGGCGCCCgGGUGgCUCGGga-GCgGCCg -3'
miRNA:   3'- -UUGUGGGgCCACaGGGCCaucUG-CGG- -5'
16212 3' -59.6 NC_004065.1 + 182438 0.67 0.81058
Target:  5'- gGGCAgCCgGGgGUCCUGGU-GACGUa -3'
miRNA:   3'- -UUGUgGGgCCaCAGGGCCAuCUGCGg -5'
16212 3' -59.6 NC_004065.1 + 170244 0.66 0.834799
Target:  5'- --uGCCCCGGUaUCgUGGccGugGCCg -3'
miRNA:   3'- uugUGGGGCCAcAGgGCCauCugCGG- -5'
16212 3' -59.6 NC_004065.1 + 169620 0.68 0.767411
Target:  5'- cAAgGCCCUGGaGUCCCuGGUccgcGACGCg -3'
miRNA:   3'- -UUgUGGGGCCaCAGGG-CCAu---CUGCGg -5'
16212 3' -59.6 NC_004065.1 + 168832 0.66 0.864754
Target:  5'- -uCGCCgCGG-GUCCUGGccuACGCCg -3'
miRNA:   3'- uuGUGGgGCCaCAGGGCCaucUGCGG- -5'
16212 3' -59.6 NC_004065.1 + 163289 0.73 0.475118
Target:  5'- cGACGCCgCCGGgGUCCgaCGGcacGGGCGCCa -3'
miRNA:   3'- -UUGUGG-GGCCaCAGG--GCCa--UCUGCGG- -5'
16212 3' -59.6 NC_004065.1 + 158268 0.67 0.785055
Target:  5'- cGACGCCaacaCGGUcaccgaCCGGUAG-CGCCg -3'
miRNA:   3'- -UUGUGGg---GCCAcag---GGCCAUCuGCGG- -5'
16212 3' -59.6 NC_004065.1 + 140986 0.68 0.77629
Target:  5'- cAACAUCCUGGUGgccaCCGGcAGcUGCCu -3'
miRNA:   3'- -UUGUGGGGCCACag--GGCCaUCuGCGG- -5'
16212 3' -59.6 NC_004065.1 + 139832 0.67 0.826883
Target:  5'- uACGgCCUGGaGUCCCGGgAGGCGg- -3'
miRNA:   3'- uUGUgGGGCCaCAGGGCCaUCUGCgg -5'
16212 3' -59.6 NC_004065.1 + 129568 0.76 0.352215
Target:  5'- --gAUgCCGGUGUUCCGGguggAGAUGCCg -3'
miRNA:   3'- uugUGgGGCCACAGGGCCa---UCUGCGG- -5'
16212 3' -59.6 NC_004065.1 + 123756 0.67 0.799668
Target:  5'- cAGCACCUCGGUGcgccgcgCgCCGGUcgccugucggacccAGGCGUCc -3'
miRNA:   3'- -UUGUGGGGCCACa------G-GGCCA--------------UCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.