miRNA display CGI


Results 1 - 20 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16212 3' -59.6 NC_004065.1 + 47298 0.66 0.871787
Target:  5'- gGugGCCCCGGcGUCgCCcGU-GAgGCCg -3'
miRNA:   3'- -UugUGGGGCCaCAG-GGcCAuCUgCGG- -5'
16212 3' -59.6 NC_004065.1 + 182438 0.67 0.81058
Target:  5'- gGGCAgCCgGGgGUCCUGGU-GACGUa -3'
miRNA:   3'- -UUGUgGGgCCaCAGGGCCAuCUGCGg -5'
16212 3' -59.6 NC_004065.1 + 1157 0.67 0.818807
Target:  5'- uGCGCCgCGGUgGUCCCcauuGUGucgucGGCGCCg -3'
miRNA:   3'- uUGUGGgGCCA-CAGGGc---CAU-----CUGCGG- -5'
16212 3' -59.6 NC_004065.1 + 63453 0.67 0.826883
Target:  5'- uGCAUCCgagcgGGUGgacgaCCCGGUgcagccgccAGGCGCCg -3'
miRNA:   3'- uUGUGGGg----CCACa----GGGCCA---------UCUGCGG- -5'
16212 3' -59.6 NC_004065.1 + 71425 0.66 0.834799
Target:  5'- aAACAUCCCGGc--UCUGGUgGGugGCCc -3'
miRNA:   3'- -UUGUGGGGCCacaGGGCCA-UCugCGG- -5'
16212 3' -59.6 NC_004065.1 + 170244 0.66 0.834799
Target:  5'- --uGCCCCGGUaUCgUGGccGugGCCg -3'
miRNA:   3'- uugUGGGGCCAcAGgGCCauCugCGG- -5'
16212 3' -59.6 NC_004065.1 + 184910 0.66 0.834799
Target:  5'- gGGCGCCCgGGUGgCUCGGga-GCgGCCg -3'
miRNA:   3'- -UUGUGGGgCCACaGGGCCaucUG-CGG- -5'
16212 3' -59.6 NC_004065.1 + 29679 0.66 0.857534
Target:  5'- gGACGCCCaGGUccucguucuuGUCaucgCCGGUcgagcggcGGACGCCg -3'
miRNA:   3'- -UUGUGGGgCCA----------CAG----GGCCA--------UCUGCGG- -5'
16212 3' -59.6 NC_004065.1 + 186846 0.66 0.857534
Target:  5'- gAGgAUCCCGaGUGUgagauguuuaUCaUGGUGGACGCCg -3'
miRNA:   3'- -UUgUGGGGC-CACA----------GG-GCCAUCUGCGG- -5'
16212 3' -59.6 NC_004065.1 + 123756 0.67 0.799668
Target:  5'- cAGCACCUCGGUGcgccgcgCgCCGGUcgccugucggacccAGGCGUCc -3'
miRNA:   3'- -UUGUGGGGCCACa------G-GGCCA--------------UCUGCGG- -5'
16212 3' -59.6 NC_004065.1 + 53538 0.67 0.785055
Target:  5'- gGACACCCacc-GUCCCGGUGccucCGCCu -3'
miRNA:   3'- -UUGUGGGgccaCAGGGCCAUcu--GCGG- -5'
16212 3' -59.6 NC_004065.1 + 140986 0.68 0.77629
Target:  5'- cAACAUCCUGGUGgccaCCGGcAGcUGCCu -3'
miRNA:   3'- -UUGUGGGGCCACag--GGCCaUCuGCGG- -5'
16212 3' -59.6 NC_004065.1 + 163289 0.73 0.475118
Target:  5'- cGACGCCgCCGGgGUCCgaCGGcacGGGCGCCa -3'
miRNA:   3'- -UUGUGG-GGCCaCAGG--GCCa--UCUGCGG- -5'
16212 3' -59.6 NC_004065.1 + 199559 0.73 0.484071
Target:  5'- cGCGCCCCaucGUG-CCgCGGUccAGACGCCg -3'
miRNA:   3'- uUGUGGGGc--CACaGG-GCCA--UCUGCGG- -5'
16212 3' -59.6 NC_004065.1 + 194596 0.72 0.502213
Target:  5'- gGACACCUCGaagacaagccGUcGUCCCGGUAcucucccacGGCGCCg -3'
miRNA:   3'- -UUGUGGGGC----------CA-CAGGGCCAU---------CUGCGG- -5'
16212 3' -59.6 NC_004065.1 + 27487 0.72 0.511396
Target:  5'- -cCugCCCGGUGUagugagCGGUcaGGACGCCa -3'
miRNA:   3'- uuGugGGGCCACAgg----GCCA--UCUGCGG- -5'
16212 3' -59.6 NC_004065.1 + 17325 0.72 0.529029
Target:  5'- -cCGCCuucgaguCCGGUGUCCuCGGUcuGAUGCCg -3'
miRNA:   3'- uuGUGG-------GGCCACAGG-GCCAu-CUGCGG- -5'
16212 3' -59.6 NC_004065.1 + 44273 0.7 0.635296
Target:  5'- aGACGCCCCacauGUGggCCCGGUcGAucCGCCu -3'
miRNA:   3'- -UUGUGGGGc---CACa-GGGCCAuCU--GCGG- -5'
16212 3' -59.6 NC_004065.1 + 71957 0.7 0.635296
Target:  5'- cGACGCCgCCGGUGgagccgggcagCCCGGaggcGACGCa -3'
miRNA:   3'- -UUGUGG-GGCCACa----------GGGCCau--CUGCGg -5'
16212 3' -59.6 NC_004065.1 + 72044 0.68 0.752981
Target:  5'- uGCACCCgGaguacGUGUaCgccaucacgacccagCCGGUGGACGCCa -3'
miRNA:   3'- uUGUGGGgC-----CACA-G---------------GGCCAUCUGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.