Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16212 | 3' | -59.6 | NC_004065.1 | + | 72044 | 0.68 | 0.752981 |
Target: 5'- uGCACCCgGaguacGUGUaCgccaucacgacccagCCGGUGGACGCCa -3' miRNA: 3'- uUGUGGGgC-----CACA-G---------------GGCCAUCUGCGG- -5' |
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16212 | 3' | -59.6 | NC_004065.1 | + | 140986 | 0.68 | 0.77629 |
Target: 5'- cAACAUCCUGGUGgccaCCGGcAGcUGCCu -3' miRNA: 3'- -UUGUGGGGCCACag--GGCCaUCuGCGG- -5' |
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16212 | 3' | -59.6 | NC_004065.1 | + | 53538 | 0.67 | 0.785055 |
Target: 5'- gGACACCCacc-GUCCCGGUGccucCGCCu -3' miRNA: 3'- -UUGUGGGgccaCAGGGCCAUcu--GCGG- -5' |
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16212 | 3' | -59.6 | NC_004065.1 | + | 158268 | 0.67 | 0.785055 |
Target: 5'- cGACGCCaacaCGGUcaccgaCCGGUAG-CGCCg -3' miRNA: 3'- -UUGUGGg---GCCAcag---GGCCAUCuGCGG- -5' |
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16212 | 3' | -59.6 | NC_004065.1 | + | 102035 | 0.67 | 0.818807 |
Target: 5'- -cCACCUCGGUGaCCCGcGgcGgccgggcguuaGCGCCg -3' miRNA: 3'- uuGUGGGGCCACaGGGC-CauC-----------UGCGG- -5' |
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16212 | 3' | -59.6 | NC_004065.1 | + | 139832 | 0.67 | 0.826883 |
Target: 5'- uACGgCCUGGaGUCCCGGgAGGCGg- -3' miRNA: 3'- uUGUgGGGCCaCAGGGCCaUCUGCgg -5' |
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16212 | 3' | -59.6 | NC_004065.1 | + | 41105 | 0.66 | 0.850131 |
Target: 5'- gAGCGCCaaGGUGaaaCCCGG-AGAC-CCg -3' miRNA: 3'- -UUGUGGggCCACa--GGGCCaUCUGcGG- -5' |
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16212 | 3' | -59.6 | NC_004065.1 | + | 207986 | 0.66 | 0.850131 |
Target: 5'- gGAUACCgCGGccUG-CCCGGggccGugGCCg -3' miRNA: 3'- -UUGUGGgGCC--ACaGGGCCau--CugCGG- -5' |
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16212 | 3' | -59.6 | NC_004065.1 | + | 168832 | 0.66 | 0.864754 |
Target: 5'- -uCGCCgCGG-GUCCUGGccuACGCCg -3' miRNA: 3'- uuGUGGgGCCaCAGGGCCaucUGCGG- -5' |
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16212 | 3' | -59.6 | NC_004065.1 | + | 30169 | 0.66 | 0.864754 |
Target: 5'- cGGCACCgaCGaGUGcCUgcggCGGUGGugGCCg -3' miRNA: 3'- -UUGUGGg-GC-CACaGG----GCCAUCugCGG- -5' |
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16212 | 3' | -59.6 | NC_004065.1 | + | 169620 | 0.68 | 0.767411 |
Target: 5'- cAAgGCCCUGGaGUCCCuGGUccgcGACGCg -3' miRNA: 3'- -UUgUGGGGCCaCAGGG-CCAu---CUGCGg -5' |
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16212 | 3' | -59.6 | NC_004065.1 | + | 108731 | 0.68 | 0.767411 |
Target: 5'- cGCugCCCGGUGagcaUCCUGGc-GAUGCg -3' miRNA: 3'- uUGugGGGCCAC----AGGGCCauCUGCGg -5' |
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16212 | 3' | -59.6 | NC_004065.1 | + | 209342 | 0.68 | 0.74842 |
Target: 5'- gGACugCCCGGUG-CCagcggcgUGGUggaAGACGCg -3' miRNA: 3'- -UUGugGGGCCACaGG-------GCCA---UCUGCGg -5' |
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16212 | 3' | -59.6 | NC_004065.1 | + | 185199 | 0.68 | 0.730889 |
Target: 5'- cGCugUCC-GUGUCgCGGUGGugGCg -3' miRNA: 3'- uUGugGGGcCACAGgGCCAUCugCGg -5' |
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16212 | 3' | -59.6 | NC_004065.1 | + | 84932 | 0.69 | 0.721547 |
Target: 5'- gAACAUCgUGGUGUUCuCGGUGGcgGCGCa -3' miRNA: 3'- -UUGUGGgGCCACAGG-GCCAUC--UGCGg -5' |
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16212 | 3' | -59.6 | NC_004065.1 | + | 121599 | 0.69 | 0.683571 |
Target: 5'- cGACGgCCCGGgacccCCCGGUagggcaGGAUGCCc -3' miRNA: 3'- -UUGUgGGGCCaca--GGGCCA------UCUGCGG- -5' |
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16212 | 3' | -59.6 | NC_004065.1 | + | 117116 | 0.71 | 0.567783 |
Target: 5'- cGCGCCCUGGUGUCgcaccugauCCGGacggAGACggGCCu -3' miRNA: 3'- uUGUGGGGCCACAG---------GGCCa---UCUG--CGG- -5' |
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16212 | 3' | -59.6 | NC_004065.1 | + | 65917 | 0.71 | 0.567783 |
Target: 5'- aGACGCCCCGG--UCUCGGUuaccGuCGCCg -3' miRNA: 3'- -UUGUGGGGCCacAGGGCCAu---CuGCGG- -5' |
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16212 | 3' | -59.6 | NC_004065.1 | + | 129568 | 0.76 | 0.352215 |
Target: 5'- --gAUgCCGGUGUUCCGGguggAGAUGCCg -3' miRNA: 3'- uugUGgGGCCACAGGGCCa---UCUGCGG- -5' |
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16212 | 3' | -59.6 | NC_004065.1 | + | 188548 | 0.66 | 0.873859 |
Target: 5'- cGACGCCCCGGcgcacgcUgcuuaccauagucucGUCCCGGcccaaaaGGACGUCc -3' miRNA: 3'- -UUGUGGGGCC-------A---------------CAGGGCCa------UCUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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