miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16212 5' -55.7 NC_004065.1 + 121282 0.66 0.966953
Target:  5'- uGGGCuUGaagACCcGCGUGAGGGCGa- -3'
miRNA:   3'- gCUCGcACa--UGGuCGCGCUCCUGUag -5'
16212 5' -55.7 NC_004065.1 + 200797 0.66 0.963795
Target:  5'- gCGGGCGacggcGUcUCGGCGCGGGGAUc-- -3'
miRNA:   3'- -GCUCGCa----CAuGGUCGCGCUCCUGuag -5'
16212 5' -55.7 NC_004065.1 + 108327 0.66 0.960433
Target:  5'- -aAGCGUGcgg-GGCGaCGGGGGCAUCu -3'
miRNA:   3'- gcUCGCACauggUCGC-GCUCCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 59132 0.66 0.956861
Target:  5'- cCGAGCGa--GCgAGCGCGAGG-CGa- -3'
miRNA:   3'- -GCUCGCacaUGgUCGCGCUCCuGUag -5'
16212 5' -55.7 NC_004065.1 + 151775 0.66 0.953075
Target:  5'- uCGGGaCGUG---CAGCGCGGcauGGACGUCc -3'
miRNA:   3'- -GCUC-GCACaugGUCGCGCU---CCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 133392 0.66 0.953075
Target:  5'- aGAGCucgcgaccGCCGGCGaCGAGGACGa- -3'
miRNA:   3'- gCUCGcaca----UGGUCGC-GCUCCUGUag -5'
16212 5' -55.7 NC_004065.1 + 198934 0.66 0.951897
Target:  5'- cCGGGCGUucugaucgccgcccGUggccACCAGcCGCGAGaaGGCGUCu -3'
miRNA:   3'- -GCUCGCA--------------CA----UGGUC-GCGCUC--CUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 136777 0.66 0.950296
Target:  5'- aGAGCGUGggggaugcggggggGCCAGCucgagcuGgGAGGGCGg- -3'
miRNA:   3'- gCUCGCACa-------------UGGUCG-------CgCUCCUGUag -5'
16212 5' -55.7 NC_004065.1 + 118052 0.66 0.947409
Target:  5'- uCGAGCGccuucaucgcgGCCGGUGacuuGAGGGCGUCc -3'
miRNA:   3'- -GCUCGCaca--------UGGUCGCg---CUCCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 133602 0.67 0.940401
Target:  5'- gGAGCGU-UGCgAGCGCGAuuucgaggcGGACGa- -3'
miRNA:   3'- gCUCGCAcAUGgUCGCGCU---------CCUGUag -5'
16212 5' -55.7 NC_004065.1 + 17506 0.67 0.940401
Target:  5'- uGGGCGUGcgGCuCAGCG-GAGGuCGUg -3'
miRNA:   3'- gCUCGCACa-UG-GUCGCgCUCCuGUAg -5'
16212 5' -55.7 NC_004065.1 + 151676 0.67 0.935729
Target:  5'- gCGAGCucuaccGCCAGCGCGGGcGcccuGCAUCg -3'
miRNA:   3'- -GCUCGcaca--UGGUCGCGCUC-C----UGUAG- -5'
16212 5' -55.7 NC_004065.1 + 316 0.67 0.925705
Target:  5'- gCGAGaCGUGUA-CGGCGUGGGuGACuuagAUCg -3'
miRNA:   3'- -GCUC-GCACAUgGUCGCGCUC-CUG----UAG- -5'
16212 5' -55.7 NC_004065.1 + 81894 0.67 0.925705
Target:  5'- gCGGGCGUGcUGaggUCGGCGU--GGACGUCg -3'
miRNA:   3'- -GCUCGCAC-AU---GGUCGCGcuCCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 36750 0.68 0.908966
Target:  5'- gCGAGCGUGgaggaCGGCGCagGAGauaagccuGACAUCa -3'
miRNA:   3'- -GCUCGCACaug--GUCGCG--CUC--------CUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 859 0.68 0.908966
Target:  5'- gGAGCGcaUGacUGCCGG-GCGAGGGCGc- -3'
miRNA:   3'- gCUCGC--AC--AUGGUCgCGCUCCUGUag -5'
16212 5' -55.7 NC_004065.1 + 204334 0.68 0.902937
Target:  5'- aGAGCGccGUGgUAGU-CGGGGACGUCg -3'
miRNA:   3'- gCUCGCa-CAUgGUCGcGCUCCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 129696 0.68 0.901084
Target:  5'- aCGAGUgucugacggacgcgGUGUGgCuGCGCGAaGACAUCg -3'
miRNA:   3'- -GCUCG--------------CACAUgGuCGCGCUcCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 110304 0.68 0.890214
Target:  5'- uGuGCGUGUGUC-GCGaCGAGGGCAUg -3'
miRNA:   3'- gCuCGCACAUGGuCGC-GCUCCUGUAg -5'
16212 5' -55.7 NC_004065.1 + 135131 0.68 0.890214
Target:  5'- cCGGGCGg--GCgCGGCGggugaugacgaCGGGGACGUCg -3'
miRNA:   3'- -GCUCGCacaUG-GUCGC-----------GCUCCUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.