miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16212 5' -55.7 NC_004065.1 + 41481 0.69 0.883528
Target:  5'- aGcAGCGUGcGCCGGgGCGucGGGACGg- -3'
miRNA:   3'- gC-UCGCACaUGGUCgCGC--UCCUGUag -5'
16212 5' -55.7 NC_004065.1 + 106361 0.69 0.883528
Target:  5'- aCGGGCaGcGcGCCAcGUGCGAGGugAUCc -3'
miRNA:   3'- -GCUCG-CaCaUGGU-CGCGCUCCugUAG- -5'
16212 5' -55.7 NC_004065.1 + 12210 0.69 0.883528
Target:  5'- uCGAGuCGUGUGCCGcuauuucuaucGCGCGuucgGGGAauaGUCa -3'
miRNA:   3'- -GCUC-GCACAUGGU-----------CGCGC----UCCUg--UAG- -5'
16212 5' -55.7 NC_004065.1 + 99387 0.69 0.882165
Target:  5'- aCGGGCGUGggcugccuggcgGCgGGCGCGuugcuGGAgAUCu -3'
miRNA:   3'- -GCUCGCACa-----------UGgUCGCGCu----CCUgUAG- -5'
16212 5' -55.7 NC_004065.1 + 122698 0.69 0.87663
Target:  5'- aCGAGCGUGUgucuGCgGGUGCuGAGcguucuGGCGUCg -3'
miRNA:   3'- -GCUCGCACA----UGgUCGCG-CUC------CUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 112184 0.69 0.869524
Target:  5'- gGAGgGUGUGCagGGCGaugaagGAGGACAUa -3'
miRNA:   3'- gCUCgCACAUGg-UCGCg-----CUCCUGUAg -5'
16212 5' -55.7 NC_004065.1 + 151538 0.69 0.862215
Target:  5'- cCGGGCgGUGUcgggcgcgcuugACgCGGCGCGGaGACAUCa -3'
miRNA:   3'- -GCUCG-CACA------------UG-GUCGCGCUcCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 165271 0.69 0.853948
Target:  5'- gGAGCGcuccuugGCCgacagcgAGCGCGAGGAgAUCu -3'
miRNA:   3'- gCUCGCaca----UGG-------UCGCGCUCCUgUAG- -5'
16212 5' -55.7 NC_004065.1 + 114181 0.7 0.847012
Target:  5'- gGAGCGcGccGCCGGcCGCGAGGAgAUg -3'
miRNA:   3'- gCUCGCaCa-UGGUC-GCGCUCCUgUAg -5'
16212 5' -55.7 NC_004065.1 + 128899 0.7 0.847012
Target:  5'- aGGGCGUGcgacGCgAGgGCGAGGGC-UCc -3'
miRNA:   3'- gCUCGCACa---UGgUCgCGCUCCUGuAG- -5'
16212 5' -55.7 NC_004065.1 + 38956 0.7 0.814436
Target:  5'- uCGAGCG---ACCGGCGCGGGGGu--- -3'
miRNA:   3'- -GCUCGCacaUGGUCGCGCUCCUguag -5'
16212 5' -55.7 NC_004065.1 + 88445 0.7 0.814436
Target:  5'- cCGAGU----GCCGG-GCGAGGGCGUCg -3'
miRNA:   3'- -GCUCGcacaUGGUCgCGCUCCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 153656 0.71 0.797174
Target:  5'- cCGcGGCG-GcGCCGGCGCGAuGGAgAUCg -3'
miRNA:   3'- -GC-UCGCaCaUGGUCGCGCU-CCUgUAG- -5'
16212 5' -55.7 NC_004065.1 + 106988 0.71 0.797174
Target:  5'- cCGAGCGgaagGCgCAGCGCcgucGGACGUCa -3'
miRNA:   3'- -GCUCGCaca-UG-GUCGCGcu--CCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 1856 0.71 0.797174
Target:  5'- gCGAGCGUccucuGUucgcCCAGCGCGguuGGaGACGUCg -3'
miRNA:   3'- -GCUCGCA-----CAu---GGUCGCGC---UC-CUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 64207 0.71 0.788327
Target:  5'- gCGGGCGgaggcaGUGUCGGCgGCGAGGACAa- -3'
miRNA:   3'- -GCUCGCa-----CAUGGUCG-CGCUCCUGUag -5'
16212 5' -55.7 NC_004065.1 + 198504 0.71 0.77024
Target:  5'- -cAGCGcg-ACCuGCGUGAGGGCGUCc -3'
miRNA:   3'- gcUCGCacaUGGuCGCGCUCCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 1304 0.71 0.751685
Target:  5'- gGAGUGUGUAUCgAGgGCGAauGGACgAUCg -3'
miRNA:   3'- gCUCGCACAUGG-UCgCGCU--CCUG-UAG- -5'
16212 5' -55.7 NC_004065.1 + 186676 0.73 0.674145
Target:  5'- aCGAGUGUcGgggACgCGGCGCGuGGGGCGUCc -3'
miRNA:   3'- -GCUCGCA-Ca--UG-GUCGCGC-UCCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 168640 0.77 0.451656
Target:  5'- gCGGGCG-GaGCCGGCGCGGcGACGUCg -3'
miRNA:   3'- -GCUCGCaCaUGGUCGCGCUcCUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.