miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16212 5' -55.7 NC_004065.1 + 316 0.67 0.925705
Target:  5'- gCGAGaCGUGUA-CGGCGUGGGuGACuuagAUCg -3'
miRNA:   3'- -GCUC-GCACAUgGUCGCGCUC-CUG----UAG- -5'
16212 5' -55.7 NC_004065.1 + 859 0.68 0.908966
Target:  5'- gGAGCGcaUGacUGCCGG-GCGAGGGCGc- -3'
miRNA:   3'- gCUCGC--AC--AUGGUCgCGCUCCUGUag -5'
16212 5' -55.7 NC_004065.1 + 1304 0.71 0.751685
Target:  5'- gGAGUGUGUAUCgAGgGCGAauGGACgAUCg -3'
miRNA:   3'- gCUCGCACAUGG-UCgCGCU--CCUG-UAG- -5'
16212 5' -55.7 NC_004065.1 + 1856 0.71 0.797174
Target:  5'- gCGAGCGUccucuGUucgcCCAGCGCGguuGGaGACGUCg -3'
miRNA:   3'- -GCUCGCA-----CAu---GGUCGCGC---UC-CUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 12210 0.69 0.883528
Target:  5'- uCGAGuCGUGUGCCGcuauuucuaucGCGCGuucgGGGAauaGUCa -3'
miRNA:   3'- -GCUC-GCACAUGGU-----------CGCGC----UCCUg--UAG- -5'
16212 5' -55.7 NC_004065.1 + 17506 0.67 0.940401
Target:  5'- uGGGCGUGcgGCuCAGCG-GAGGuCGUg -3'
miRNA:   3'- gCUCGCACa-UG-GUCGCgCUCCuGUAg -5'
16212 5' -55.7 NC_004065.1 + 36750 0.68 0.908966
Target:  5'- gCGAGCGUGgaggaCGGCGCagGAGauaagccuGACAUCa -3'
miRNA:   3'- -GCUCGCACaug--GUCGCG--CUC--------CUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 38956 0.7 0.814436
Target:  5'- uCGAGCG---ACCGGCGCGGGGGu--- -3'
miRNA:   3'- -GCUCGCacaUGGUCGCGCUCCUguag -5'
16212 5' -55.7 NC_004065.1 + 41481 0.69 0.883528
Target:  5'- aGcAGCGUGcGCCGGgGCGucGGGACGg- -3'
miRNA:   3'- gC-UCGCACaUGGUCgCGC--UCCUGUag -5'
16212 5' -55.7 NC_004065.1 + 59132 0.66 0.956861
Target:  5'- cCGAGCGa--GCgAGCGCGAGG-CGa- -3'
miRNA:   3'- -GCUCGCacaUGgUCGCGCUCCuGUag -5'
16212 5' -55.7 NC_004065.1 + 64207 0.71 0.788327
Target:  5'- gCGGGCGgaggcaGUGUCGGCgGCGAGGACAa- -3'
miRNA:   3'- -GCUCGCa-----CAUGGUCG-CGCUCCUGUag -5'
16212 5' -55.7 NC_004065.1 + 81894 0.67 0.925705
Target:  5'- gCGGGCGUGcUGaggUCGGCGU--GGACGUCg -3'
miRNA:   3'- -GCUCGCAC-AU---GGUCGCGcuCCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 88445 0.7 0.814436
Target:  5'- cCGAGU----GCCGG-GCGAGGGCGUCg -3'
miRNA:   3'- -GCUCGcacaUGGUCgCGCUCCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 99387 0.69 0.882165
Target:  5'- aCGGGCGUGggcugccuggcgGCgGGCGCGuugcuGGAgAUCu -3'
miRNA:   3'- -GCUCGCACa-----------UGgUCGCGCu----CCUgUAG- -5'
16212 5' -55.7 NC_004065.1 + 106361 0.69 0.883528
Target:  5'- aCGGGCaGcGcGCCAcGUGCGAGGugAUCc -3'
miRNA:   3'- -GCUCG-CaCaUGGU-CGCGCUCCugUAG- -5'
16212 5' -55.7 NC_004065.1 + 106988 0.71 0.797174
Target:  5'- cCGAGCGgaagGCgCAGCGCcgucGGACGUCa -3'
miRNA:   3'- -GCUCGCaca-UG-GUCGCGcu--CCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 108327 0.66 0.960433
Target:  5'- -aAGCGUGcgg-GGCGaCGGGGGCAUCu -3'
miRNA:   3'- gcUCGCACauggUCGC-GCUCCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 110304 0.68 0.890214
Target:  5'- uGuGCGUGUGUC-GCGaCGAGGGCAUg -3'
miRNA:   3'- gCuCGCACAUGGuCGC-GCUCCUGUAg -5'
16212 5' -55.7 NC_004065.1 + 112184 0.69 0.869524
Target:  5'- gGAGgGUGUGCagGGCGaugaagGAGGACAUa -3'
miRNA:   3'- gCUCgCACAUGg-UCGCg-----CUCCUGUAg -5'
16212 5' -55.7 NC_004065.1 + 114181 0.7 0.847012
Target:  5'- gGAGCGcGccGCCGGcCGCGAGGAgAUg -3'
miRNA:   3'- gCUCGCaCa-UGGUC-GCGCUCCUgUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.