miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16212 5' -55.7 NC_004065.1 + 204334 0.68 0.902937
Target:  5'- aGAGCGccGUGgUAGU-CGGGGACGUCg -3'
miRNA:   3'- gCUCGCa-CAUgGUCGcGCUCCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 201673 1.1 0.004421
Target:  5'- cCGAGCGUGUACCAGCGCGAGGACAUCu -3'
miRNA:   3'- -GCUCGCACAUGGUCGCGCUCCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 200797 0.66 0.963795
Target:  5'- gCGGGCGacggcGUcUCGGCGCGGGGAUc-- -3'
miRNA:   3'- -GCUCGCa----CAuGGUCGCGCUCCUGuag -5'
16212 5' -55.7 NC_004065.1 + 198934 0.66 0.951897
Target:  5'- cCGGGCGUucugaucgccgcccGUggccACCAGcCGCGAGaaGGCGUCu -3'
miRNA:   3'- -GCUCGCA--------------CA----UGGUC-GCGCUC--CUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 198504 0.71 0.77024
Target:  5'- -cAGCGcg-ACCuGCGUGAGGGCGUCc -3'
miRNA:   3'- gcUCGCacaUGGuCGCGCUCCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 186676 0.73 0.674145
Target:  5'- aCGAGUGUcGgggACgCGGCGCGuGGGGCGUCc -3'
miRNA:   3'- -GCUCGCA-Ca--UG-GUCGCGC-UCCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 168640 0.77 0.451656
Target:  5'- gCGGGCG-GaGCCGGCGCGGcGACGUCg -3'
miRNA:   3'- -GCUCGCaCaUGGUCGCGCUcCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 165271 0.69 0.853948
Target:  5'- gGAGCGcuccuugGCCgacagcgAGCGCGAGGAgAUCu -3'
miRNA:   3'- gCUCGCaca----UGG-------UCGCGCUCCUgUAG- -5'
16212 5' -55.7 NC_004065.1 + 153656 0.71 0.797174
Target:  5'- cCGcGGCG-GcGCCGGCGCGAuGGAgAUCg -3'
miRNA:   3'- -GC-UCGCaCaUGGUCGCGCU-CCUgUAG- -5'
16212 5' -55.7 NC_004065.1 + 151775 0.66 0.953075
Target:  5'- uCGGGaCGUG---CAGCGCGGcauGGACGUCc -3'
miRNA:   3'- -GCUC-GCACaugGUCGCGCU---CCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 151676 0.67 0.935729
Target:  5'- gCGAGCucuaccGCCAGCGCGGGcGcccuGCAUCg -3'
miRNA:   3'- -GCUCGcaca--UGGUCGCGCUC-C----UGUAG- -5'
16212 5' -55.7 NC_004065.1 + 151538 0.69 0.862215
Target:  5'- cCGGGCgGUGUcgggcgcgcuugACgCGGCGCGGaGACAUCa -3'
miRNA:   3'- -GCUCG-CACA------------UG-GUCGCGCUcCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 136777 0.66 0.950296
Target:  5'- aGAGCGUGggggaugcggggggGCCAGCucgagcuGgGAGGGCGg- -3'
miRNA:   3'- gCUCGCACa-------------UGGUCG-------CgCUCCUGUag -5'
16212 5' -55.7 NC_004065.1 + 135131 0.68 0.890214
Target:  5'- cCGGGCGg--GCgCGGCGggugaugacgaCGGGGACGUCg -3'
miRNA:   3'- -GCUCGCacaUG-GUCGC-----------GCUCCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 133602 0.67 0.940401
Target:  5'- gGAGCGU-UGCgAGCGCGAuuucgaggcGGACGa- -3'
miRNA:   3'- gCUCGCAcAUGgUCGCGCU---------CCUGUag -5'
16212 5' -55.7 NC_004065.1 + 133392 0.66 0.953075
Target:  5'- aGAGCucgcgaccGCCGGCGaCGAGGACGa- -3'
miRNA:   3'- gCUCGcaca----UGGUCGC-GCUCCUGUag -5'
16212 5' -55.7 NC_004065.1 + 129696 0.68 0.901084
Target:  5'- aCGAGUgucugacggacgcgGUGUGgCuGCGCGAaGACAUCg -3'
miRNA:   3'- -GCUCG--------------CACAUgGuCGCGCUcCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 128899 0.7 0.847012
Target:  5'- aGGGCGUGcgacGCgAGgGCGAGGGC-UCc -3'
miRNA:   3'- gCUCGCACa---UGgUCgCGCUCCUGuAG- -5'
16212 5' -55.7 NC_004065.1 + 122698 0.69 0.87663
Target:  5'- aCGAGCGUGUgucuGCgGGUGCuGAGcguucuGGCGUCg -3'
miRNA:   3'- -GCUCGCACA----UGgUCGCG-CUC------CUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 121282 0.66 0.966953
Target:  5'- uGGGCuUGaagACCcGCGUGAGGGCGa- -3'
miRNA:   3'- gCUCGcACa--UGGuCGCGCUCCUGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.