miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16212 5' -55.7 NC_004065.1 + 201673 1.1 0.004421
Target:  5'- cCGAGCGUGUACCAGCGCGAGGACAUCu -3'
miRNA:   3'- -GCUCGCACAUGGUCGCGCUCCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 200797 0.66 0.963795
Target:  5'- gCGGGCGacggcGUcUCGGCGCGGGGAUc-- -3'
miRNA:   3'- -GCUCGCa----CAuGGUCGCGCUCCUGuag -5'
16212 5' -55.7 NC_004065.1 + 108327 0.66 0.960433
Target:  5'- -aAGCGUGcgg-GGCGaCGGGGGCAUCu -3'
miRNA:   3'- gcUCGCACauggUCGC-GCUCCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 59132 0.66 0.956861
Target:  5'- cCGAGCGa--GCgAGCGCGAGG-CGa- -3'
miRNA:   3'- -GCUCGCacaUGgUCGCGCUCCuGUag -5'
16212 5' -55.7 NC_004065.1 + 151775 0.66 0.953075
Target:  5'- uCGGGaCGUG---CAGCGCGGcauGGACGUCc -3'
miRNA:   3'- -GCUC-GCACaugGUCGCGCU---CCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 198934 0.66 0.951897
Target:  5'- cCGGGCGUucugaucgccgcccGUggccACCAGcCGCGAGaaGGCGUCu -3'
miRNA:   3'- -GCUCGCA--------------CA----UGGUC-GCGCUC--CUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 151676 0.67 0.935729
Target:  5'- gCGAGCucuaccGCCAGCGCGGGcGcccuGCAUCg -3'
miRNA:   3'- -GCUCGcaca--UGGUCGCGCUC-C----UGUAG- -5'
16212 5' -55.7 NC_004065.1 + 81894 0.67 0.925705
Target:  5'- gCGGGCGUGcUGaggUCGGCGU--GGACGUCg -3'
miRNA:   3'- -GCUCGCAC-AU---GGUCGCGcuCCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 36750 0.68 0.908966
Target:  5'- gCGAGCGUGgaggaCGGCGCagGAGauaagccuGACAUCa -3'
miRNA:   3'- -GCUCGCACaug--GUCGCG--CUC--------CUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 204334 0.68 0.902937
Target:  5'- aGAGCGccGUGgUAGU-CGGGGACGUCg -3'
miRNA:   3'- gCUCGCa-CAUgGUCGcGCUCCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 135131 0.68 0.890214
Target:  5'- cCGGGCGg--GCgCGGCGggugaugacgaCGGGGACGUCg -3'
miRNA:   3'- -GCUCGCacaUG-GUCGC-----------GCUCCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 168640 0.77 0.451656
Target:  5'- gCGGGCG-GaGCCGGCGCGGcGACGUCg -3'
miRNA:   3'- -GCUCGCaCaUGGUCGCGCUcCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 1304 0.71 0.751685
Target:  5'- gGAGUGUGUAUCgAGgGCGAauGGACgAUCg -3'
miRNA:   3'- gCUCGCACAUGG-UCgCGCU--CCUG-UAG- -5'
16212 5' -55.7 NC_004065.1 + 64207 0.71 0.788327
Target:  5'- gCGGGCGgaggcaGUGUCGGCgGCGAGGACAa- -3'
miRNA:   3'- -GCUCGCa-----CAUGGUCG-CGCUCCUGUag -5'
16212 5' -55.7 NC_004065.1 + 128899 0.7 0.847012
Target:  5'- aGGGCGUGcgacGCgAGgGCGAGGGC-UCc -3'
miRNA:   3'- gCUCGCACa---UGgUCgCGCUCCUGuAG- -5'
16212 5' -55.7 NC_004065.1 + 114181 0.7 0.847012
Target:  5'- gGAGCGcGccGCCGGcCGCGAGGAgAUg -3'
miRNA:   3'- gCUCGCaCa-UGGUC-GCGCUCCUgUAg -5'
16212 5' -55.7 NC_004065.1 + 112184 0.69 0.869524
Target:  5'- gGAGgGUGUGCagGGCGaugaagGAGGACAUa -3'
miRNA:   3'- gCUCgCACAUGg-UCGCg-----CUCCUGUAg -5'
16212 5' -55.7 NC_004065.1 + 41481 0.69 0.883528
Target:  5'- aGcAGCGUGcGCCGGgGCGucGGGACGg- -3'
miRNA:   3'- gC-UCGCACaUGGUCgCGC--UCCUGUag -5'
16212 5' -55.7 NC_004065.1 + 121282 0.66 0.966953
Target:  5'- uGGGCuUGaagACCcGCGUGAGGGCGa- -3'
miRNA:   3'- gCUCGcACa--UGGuCGCGCUCCUGUag -5'
16212 5' -55.7 NC_004065.1 + 198504 0.71 0.77024
Target:  5'- -cAGCGcg-ACCuGCGUGAGGGCGUCc -3'
miRNA:   3'- gcUCGCacaUGGuCGCGCUCCUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.