miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16212 5' -55.7 NC_004065.1 + 859 0.68 0.908966
Target:  5'- gGAGCGcaUGacUGCCGG-GCGAGGGCGc- -3'
miRNA:   3'- gCUCGC--AC--AUGGUCgCGCUCCUGUag -5'
16212 5' -55.7 NC_004065.1 + 316 0.67 0.925705
Target:  5'- gCGAGaCGUGUA-CGGCGUGGGuGACuuagAUCg -3'
miRNA:   3'- -GCUC-GCACAUgGUCGCGCUC-CUG----UAG- -5'
16212 5' -55.7 NC_004065.1 + 17506 0.67 0.940401
Target:  5'- uGGGCGUGcgGCuCAGCG-GAGGuCGUg -3'
miRNA:   3'- gCUCGCACa-UG-GUCGCgCUCCuGUAg -5'
16212 5' -55.7 NC_004065.1 + 133602 0.67 0.940401
Target:  5'- gGAGCGU-UGCgAGCGCGAuuucgaggcGGACGa- -3'
miRNA:   3'- gCUCGCAcAUGgUCGCGCU---------CCUGUag -5'
16212 5' -55.7 NC_004065.1 + 118052 0.66 0.947409
Target:  5'- uCGAGCGccuucaucgcgGCCGGUGacuuGAGGGCGUCc -3'
miRNA:   3'- -GCUCGCaca--------UGGUCGCg---CUCCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 136777 0.66 0.950296
Target:  5'- aGAGCGUGggggaugcggggggGCCAGCucgagcuGgGAGGGCGg- -3'
miRNA:   3'- gCUCGCACa-------------UGGUCG-------CgCUCCUGUag -5'
16212 5' -55.7 NC_004065.1 + 133392 0.66 0.953075
Target:  5'- aGAGCucgcgaccGCCGGCGaCGAGGACGa- -3'
miRNA:   3'- gCUCGcaca----UGGUCGC-GCUCCUGUag -5'
16212 5' -55.7 NC_004065.1 + 121282 0.66 0.966953
Target:  5'- uGGGCuUGaagACCcGCGUGAGGGCGa- -3'
miRNA:   3'- gCUCGcACa--UGGuCGCGCUCCUGUag -5'
16212 5' -55.7 NC_004065.1 + 106361 0.69 0.883528
Target:  5'- aCGGGCaGcGcGCCAcGUGCGAGGugAUCc -3'
miRNA:   3'- -GCUCG-CaCaUGGU-CGCGCUCCugUAG- -5'
16212 5' -55.7 NC_004065.1 + 12210 0.69 0.883528
Target:  5'- uCGAGuCGUGUGCCGcuauuucuaucGCGCGuucgGGGAauaGUCa -3'
miRNA:   3'- -GCUC-GCACAUGGU-----------CGCGC----UCCUg--UAG- -5'
16212 5' -55.7 NC_004065.1 + 99387 0.69 0.882165
Target:  5'- aCGGGCGUGggcugccuggcgGCgGGCGCGuugcuGGAgAUCu -3'
miRNA:   3'- -GCUCGCACa-----------UGgUCGCGCu----CCUgUAG- -5'
16212 5' -55.7 NC_004065.1 + 198504 0.71 0.77024
Target:  5'- -cAGCGcg-ACCuGCGUGAGGGCGUCc -3'
miRNA:   3'- gcUCGCacaUGGuCGCGCUCCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 1856 0.71 0.797174
Target:  5'- gCGAGCGUccucuGUucgcCCAGCGCGguuGGaGACGUCg -3'
miRNA:   3'- -GCUCGCA-----CAu---GGUCGCGC---UC-CUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 106988 0.71 0.797174
Target:  5'- cCGAGCGgaagGCgCAGCGCcgucGGACGUCa -3'
miRNA:   3'- -GCUCGCaca-UG-GUCGCGcu--CCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 153656 0.71 0.797174
Target:  5'- cCGcGGCG-GcGCCGGCGCGAuGGAgAUCg -3'
miRNA:   3'- -GC-UCGCaCaUGGUCGCGCU-CCUgUAG- -5'
16212 5' -55.7 NC_004065.1 + 38956 0.7 0.814436
Target:  5'- uCGAGCG---ACCGGCGCGGGGGu--- -3'
miRNA:   3'- -GCUCGCacaUGGUCGCGCUCCUguag -5'
16212 5' -55.7 NC_004065.1 + 88445 0.7 0.814436
Target:  5'- cCGAGU----GCCGG-GCGAGGGCGUCg -3'
miRNA:   3'- -GCUCGcacaUGGUCgCGCUCCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 165271 0.69 0.853948
Target:  5'- gGAGCGcuccuugGCCgacagcgAGCGCGAGGAgAUCu -3'
miRNA:   3'- gCUCGCaca----UGG-------UCGCGCUCCUgUAG- -5'
16212 5' -55.7 NC_004065.1 + 151538 0.69 0.862215
Target:  5'- cCGGGCgGUGUcgggcgcgcuugACgCGGCGCGGaGACAUCa -3'
miRNA:   3'- -GCUCG-CACA------------UG-GUCGCGCUcCUGUAG- -5'
16212 5' -55.7 NC_004065.1 + 122698 0.69 0.87663
Target:  5'- aCGAGCGUGUgucuGCgGGUGCuGAGcguucuGGCGUCg -3'
miRNA:   3'- -GCUCGCACA----UGgUCGCG-CUC------CUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.