Results 21 - 40 of 41 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16212 | 5' | -55.7 | NC_004065.1 | + | 186676 | 0.73 | 0.674145 |
Target: 5'- aCGAGUGUcGgggACgCGGCGCGuGGGGCGUCc -3' miRNA: 3'- -GCUCGCA-Ca--UG-GUCGCGC-UCCUGUAG- -5' |
|||||||
16212 | 5' | -55.7 | NC_004065.1 | + | 165271 | 0.69 | 0.853948 |
Target: 5'- gGAGCGcuccuugGCCgacagcgAGCGCGAGGAgAUCu -3' miRNA: 3'- gCUCGCaca----UGG-------UCGCGCUCCUgUAG- -5' |
|||||||
16212 | 5' | -55.7 | NC_004065.1 | + | 17506 | 0.67 | 0.940401 |
Target: 5'- uGGGCGUGcgGCuCAGCG-GAGGuCGUg -3' miRNA: 3'- gCUCGCACa-UG-GUCGCgCUCCuGUAg -5' |
|||||||
16212 | 5' | -55.7 | NC_004065.1 | + | 41481 | 0.69 | 0.883528 |
Target: 5'- aGcAGCGUGcGCCGGgGCGucGGGACGg- -3' miRNA: 3'- gC-UCGCACaUGGUCgCGC--UCCUGUag -5' |
|||||||
16212 | 5' | -55.7 | NC_004065.1 | + | 112184 | 0.69 | 0.869524 |
Target: 5'- gGAGgGUGUGCagGGCGaugaagGAGGACAUa -3' miRNA: 3'- gCUCgCACAUGg-UCGCg-----CUCCUGUAg -5' |
|||||||
16212 | 5' | -55.7 | NC_004065.1 | + | 114181 | 0.7 | 0.847012 |
Target: 5'- gGAGCGcGccGCCGGcCGCGAGGAgAUg -3' miRNA: 3'- gCUCGCaCa-UGGUC-GCGCUCCUgUAg -5' |
|||||||
16212 | 5' | -55.7 | NC_004065.1 | + | 128899 | 0.7 | 0.847012 |
Target: 5'- aGGGCGUGcgacGCgAGgGCGAGGGC-UCc -3' miRNA: 3'- gCUCGCACa---UGgUCgCGCUCCUGuAG- -5' |
|||||||
16212 | 5' | -55.7 | NC_004065.1 | + | 64207 | 0.71 | 0.788327 |
Target: 5'- gCGGGCGgaggcaGUGUCGGCgGCGAGGACAa- -3' miRNA: 3'- -GCUCGCa-----CAUGGUCG-CGCUCCUGUag -5' |
|||||||
16212 | 5' | -55.7 | NC_004065.1 | + | 1304 | 0.71 | 0.751685 |
Target: 5'- gGAGUGUGUAUCgAGgGCGAauGGACgAUCg -3' miRNA: 3'- gCUCGCACAUGG-UCgCGCU--CCUG-UAG- -5' |
|||||||
16212 | 5' | -55.7 | NC_004065.1 | + | 168640 | 0.77 | 0.451656 |
Target: 5'- gCGGGCG-GaGCCGGCGCGGcGACGUCg -3' miRNA: 3'- -GCUCGCaCaUGGUCGCGCUcCUGUAG- -5' |
|||||||
16212 | 5' | -55.7 | NC_004065.1 | + | 135131 | 0.68 | 0.890214 |
Target: 5'- cCGGGCGg--GCgCGGCGggugaugacgaCGGGGACGUCg -3' miRNA: 3'- -GCUCGCacaUG-GUCGC-----------GCUCCUGUAG- -5' |
|||||||
16212 | 5' | -55.7 | NC_004065.1 | + | 204334 | 0.68 | 0.902937 |
Target: 5'- aGAGCGccGUGgUAGU-CGGGGACGUCg -3' miRNA: 3'- gCUCGCa-CAUgGUCGcGCUCCUGUAG- -5' |
|||||||
16212 | 5' | -55.7 | NC_004065.1 | + | 200797 | 0.66 | 0.963795 |
Target: 5'- gCGGGCGacggcGUcUCGGCGCGGGGAUc-- -3' miRNA: 3'- -GCUCGCa----CAuGGUCGCGCUCCUGuag -5' |
|||||||
16212 | 5' | -55.7 | NC_004065.1 | + | 108327 | 0.66 | 0.960433 |
Target: 5'- -aAGCGUGcgg-GGCGaCGGGGGCAUCu -3' miRNA: 3'- gcUCGCACauggUCGC-GCUCCUGUAG- -5' |
|||||||
16212 | 5' | -55.7 | NC_004065.1 | + | 151775 | 0.66 | 0.953075 |
Target: 5'- uCGGGaCGUG---CAGCGCGGcauGGACGUCc -3' miRNA: 3'- -GCUC-GCACaugGUCGCGCU---CCUGUAG- -5' |
|||||||
16212 | 5' | -55.7 | NC_004065.1 | + | 59132 | 0.66 | 0.956861 |
Target: 5'- cCGAGCGa--GCgAGCGCGAGG-CGa- -3' miRNA: 3'- -GCUCGCacaUGgUCGCGCUCCuGUag -5' |
|||||||
16212 | 5' | -55.7 | NC_004065.1 | + | 198934 | 0.66 | 0.951897 |
Target: 5'- cCGGGCGUucugaucgccgcccGUggccACCAGcCGCGAGaaGGCGUCu -3' miRNA: 3'- -GCUCGCA--------------CA----UGGUC-GCGCUC--CUGUAG- -5' |
|||||||
16212 | 5' | -55.7 | NC_004065.1 | + | 151676 | 0.67 | 0.935729 |
Target: 5'- gCGAGCucuaccGCCAGCGCGGGcGcccuGCAUCg -3' miRNA: 3'- -GCUCGcaca--UGGUCGCGCUC-C----UGUAG- -5' |
|||||||
16212 | 5' | -55.7 | NC_004065.1 | + | 81894 | 0.67 | 0.925705 |
Target: 5'- gCGGGCGUGcUGaggUCGGCGU--GGACGUCg -3' miRNA: 3'- -GCUCGCAC-AU---GGUCGCGcuCCUGUAG- -5' |
|||||||
16212 | 5' | -55.7 | NC_004065.1 | + | 36750 | 0.68 | 0.908966 |
Target: 5'- gCGAGCGUGgaggaCGGCGCagGAGauaagccuGACAUCa -3' miRNA: 3'- -GCUCGCACaug--GUCGCG--CUC--------CUGUAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home