miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16213 3' -61.7 NC_004065.1 + 145956 0.66 0.766794
Target:  5'- cGGCaGGAUCcGAGCCaUCGG-CUCCu -3'
miRNA:   3'- cCCG-CCUAGuCUCGGaGGCCgGAGGu -5'
16213 3' -61.7 NC_004065.1 + 74171 0.66 0.766794
Target:  5'- aGGCGGcGUUcGAGCCgaugaCCGcCCUCCAg -3'
miRNA:   3'- cCCGCC-UAGuCUCGGa----GGCcGGAGGU- -5'
16213 3' -61.7 NC_004065.1 + 142652 0.66 0.766794
Target:  5'- cGGCGGAUgCAGGGCCUgCucuGCgaCCAu -3'
miRNA:   3'- cCCGCCUA-GUCUCGGAgGc--CGgaGGU- -5'
16213 3' -61.7 NC_004065.1 + 63056 0.66 0.765909
Target:  5'- gGGGCGGcgCagucgcaGGAGUCgCCGGUCgCCGg -3'
miRNA:   3'- -CCCGCCuaG-------UCUCGGaGGCCGGaGGU- -5'
16213 3' -61.7 NC_004065.1 + 210595 0.66 0.757898
Target:  5'- -aGCaGcgCGGuGCCUCCGGCacCUCCGc -3'
miRNA:   3'- ccCGcCuaGUCuCGGAGGCCG--GAGGU- -5'
16213 3' -61.7 NC_004065.1 + 38222 0.66 0.757898
Target:  5'- cGGGgGGGUgGGAucCCUCCGGCUUg-- -3'
miRNA:   3'- -CCCgCCUAgUCUc-GGAGGCCGGAggu -5'
16213 3' -61.7 NC_004065.1 + 110977 0.66 0.757002
Target:  5'- aGGaCGGGUCAGAGCgUCguguugacgagcaCGGCCauguaccacgcgUCCAa -3'
miRNA:   3'- cCC-GCCUAGUCUCGgAG-------------GCCGG------------AGGU- -5'
16213 3' -61.7 NC_004065.1 + 194235 0.66 0.73982
Target:  5'- cGGGaUGGGUCAGcuGCCUCUucGCCUCg- -3'
miRNA:   3'- -CCC-GCCUAGUCu-CGGAGGc-CGGAGgu -5'
16213 3' -61.7 NC_004065.1 + 176192 0.67 0.721413
Target:  5'- cGGCGGAggcagcuguuUCAGAGUCUgacgguucaCCGGCuCUCg- -3'
miRNA:   3'- cCCGCCU----------AGUCUCGGA---------GGCCG-GAGgu -5'
16213 3' -61.7 NC_004065.1 + 154418 0.67 0.721412
Target:  5'- cGGGaucaGGAcCAGAcCCagCGGCCUCCc -3'
miRNA:   3'- -CCCg---CCUaGUCUcGGagGCCGGAGGu -5'
16213 3' -61.7 NC_004065.1 + 116150 0.67 0.712105
Target:  5'- cGGCGGcUCGGGGCCgggUCGGUaggucucggaUCCAa -3'
miRNA:   3'- cCCGCCuAGUCUCGGa--GGCCGg---------AGGU- -5'
16213 3' -61.7 NC_004065.1 + 146597 0.67 0.712104
Target:  5'- gGGGUGGccAUCGGGGCCgUCGGCggggCCGu -3'
miRNA:   3'- -CCCGCC--UAGUCUCGGaGGCCGga--GGU- -5'
16213 3' -61.7 NC_004065.1 + 37301 0.67 0.702737
Target:  5'- cGGCGGccUCAaGAGCCcCCGGUCggcaCCAg -3'
miRNA:   3'- cCCGCCu-AGU-CUCGGaGGCCGGa---GGU- -5'
16213 3' -61.7 NC_004065.1 + 23626 0.67 0.693317
Target:  5'- cGGGUGGAcgggCGGcuGGCCUCgGGCCg--- -3'
miRNA:   3'- -CCCGCCUa---GUC--UCGGAGgCCGGaggu -5'
16213 3' -61.7 NC_004065.1 + 132408 0.67 0.693316
Target:  5'- aGGGCGGcucuUCGGcAGCggCggCGGCCUCCu -3'
miRNA:   3'- -CCCGCCu---AGUC-UCGgaG--GCCGGAGGu -5'
16213 3' -61.7 NC_004065.1 + 114939 0.67 0.683852
Target:  5'- cGGUGaucaucaucaGUCGGcGCCgCCGGCCUCCAg -3'
miRNA:   3'- cCCGCc---------UAGUCuCGGaGGCCGGAGGU- -5'
16213 3' -61.7 NC_004065.1 + 128466 0.68 0.67435
Target:  5'- cGGGCGcGAUCAGGcuaccacuGCCagcgCCGcugcugcugccGCCUCCAc -3'
miRNA:   3'- -CCCGC-CUAGUCU--------CGGa---GGC-----------CGGAGGU- -5'
16213 3' -61.7 NC_004065.1 + 136673 0.68 0.645689
Target:  5'- cGGGCGGGUCuG-GCCggcggcgggCCGGCUcgagcuuuuaUCCGc -3'
miRNA:   3'- -CCCGCCUAGuCuCGGa--------GGCCGG----------AGGU- -5'
16213 3' -61.7 NC_004065.1 + 141214 0.68 0.636108
Target:  5'- gGGGUGGAcCGcAGCCUCaacaCGGgCUCCAu -3'
miRNA:   3'- -CCCGCCUaGUcUCGGAG----GCCgGAGGU- -5'
16213 3' -61.7 NC_004065.1 + 153326 0.69 0.615986
Target:  5'- cGGCGGAUCcuggagaAGGGCCUCCccaGGCUgaucgUCAg -3'
miRNA:   3'- cCCGCCUAG-------UCUCGGAGG---CCGGa----GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.