miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16213 3' -61.7 NC_004065.1 + 202338 1.1 0.001217
Target:  5'- cGGGCGGAUCAGAGCCUCCGGCCUCCAg -3'
miRNA:   3'- -CCCGCCUAGUCUCGGAGGCCGGAGGU- -5'
16213 3' -61.7 NC_004065.1 + 139896 0.79 0.173701
Target:  5'- aGGUGGccgCGGGGCCUCCGGCCggcggcgCCAg -3'
miRNA:   3'- cCCGCCua-GUCUCGGAGGCCGGa------GGU- -5'
16213 3' -61.7 NC_004065.1 + 180655 0.77 0.229585
Target:  5'- aGGGUGGAUCAuGaAGCCUCCugauGGCC-CCAa -3'
miRNA:   3'- -CCCGCCUAGU-C-UCGGAGG----CCGGaGGU- -5'
16213 3' -61.7 NC_004065.1 + 210154 0.75 0.293466
Target:  5'- gGGGUGGAUCAGGGUCUCUaGCacgCCAu -3'
miRNA:   3'- -CCCGCCUAGUCUCGGAGGcCGga-GGU- -5'
16213 3' -61.7 NC_004065.1 + 147087 0.74 0.31314
Target:  5'- aGGGCcaaccuggccaGGGUCugggccGAGCuCUUCGGCCUCCAg -3'
miRNA:   3'- -CCCG-----------CCUAGu-----CUCG-GAGGCCGGAGGU- -5'
16213 3' -61.7 NC_004065.1 + 33755 0.74 0.340901
Target:  5'- -uGCaGGAgUCGGAgGCCUCgGGCCUCCAu -3'
miRNA:   3'- ccCG-CCU-AGUCU-CGGAGgCCGGAGGU- -5'
16213 3' -61.7 NC_004065.1 + 57925 0.72 0.43441
Target:  5'- -cGCGG-UCAGAGCCgccucccCCGGCCccUCCAc -3'
miRNA:   3'- ccCGCCuAGUCUCGGa------GGCCGG--AGGU- -5'
16213 3' -61.7 NC_004065.1 + 80847 0.72 0.437776
Target:  5'- -aGCGGAUCGGAcgagcgccaggccagGUCUCCGGCCccCCGa -3'
miRNA:   3'- ccCGCCUAGUCU---------------CGGAGGCCGGa-GGU- -5'
16213 3' -61.7 NC_004065.1 + 17302 0.72 0.442853
Target:  5'- cGGCGGAgacaacggccUCGGAGCCgccuucgagUCCGGUgUCCu -3'
miRNA:   3'- cCCGCCU----------AGUCUCGG---------AGGCCGgAGGu -5'
16213 3' -61.7 NC_004065.1 + 30136 0.71 0.486398
Target:  5'- aGGGCGGGUggCGGAGCgaCCGGaCCcagCCGc -3'
miRNA:   3'- -CCCGCCUA--GUCUCGgaGGCC-GGa--GGU- -5'
16213 3' -61.7 NC_004065.1 + 115902 0.71 0.495352
Target:  5'- -uGCGGcUCGGGGCCgucgUCGGCCUCg- -3'
miRNA:   3'- ccCGCCuAGUCUCGGa---GGCCGGAGgu -5'
16213 3' -61.7 NC_004065.1 + 168582 0.7 0.541155
Target:  5'- cGGaGCGGGUCGG-GCCggCCcuggguaggGGCCUCUAc -3'
miRNA:   3'- -CC-CGCCUAGUCuCGGa-GG---------CCGGAGGU- -5'
16213 3' -61.7 NC_004065.1 + 202140 0.7 0.541156
Target:  5'- cGGCaGGAUCGGAcggagGUC-CCGGCCgUCCAu -3'
miRNA:   3'- cCCG-CCUAGUCU-----CGGaGGCCGG-AGGU- -5'
16213 3' -61.7 NC_004065.1 + 94741 0.7 0.559882
Target:  5'- cGGCGGAgacgcguuUCAGcgcgaaccuGGCCagCCGGuCCUCCAu -3'
miRNA:   3'- cCCGCCU--------AGUC---------UCGGa-GGCC-GGAGGU- -5'
16213 3' -61.7 NC_004065.1 + 169149 0.69 0.578784
Target:  5'- cGGGCGGGaauacgAGGGCCUgaUGGCCUUCGc -3'
miRNA:   3'- -CCCGCCUag----UCUCGGAg-GCCGGAGGU- -5'
16213 3' -61.7 NC_004065.1 + 91705 0.69 0.582582
Target:  5'- uGGGUgaggaggccucgcacGcGAUCAGGGCCgcguccaCGGCCUCCc -3'
miRNA:   3'- -CCCG---------------C-CUAGUCUCGGag-----GCCGGAGGu -5'
16213 3' -61.7 NC_004065.1 + 170080 0.69 0.588288
Target:  5'- uGGCGGGcaccacUCcGGGCUUCUGGCCgcgCCGc -3'
miRNA:   3'- cCCGCCU------AGuCUCGGAGGCCGGa--GGU- -5'
16213 3' -61.7 NC_004065.1 + 146364 0.69 0.59782
Target:  5'- cGGCGGAU-----UCUCCGGCCUCUAc -3'
miRNA:   3'- cCCGCCUAgucucGGAGGCCGGAGGU- -5'
16213 3' -61.7 NC_004065.1 + 153326 0.69 0.615986
Target:  5'- cGGCGGAUCcuggagaAGGGCCUCCccaGGCUgaucgUCAg -3'
miRNA:   3'- cCCGCCUAG-------UCUCGGAGG---CCGGa----GGU- -5'
16213 3' -61.7 NC_004065.1 + 141214 0.68 0.636108
Target:  5'- gGGGUGGAcCGcAGCCUCaacaCGGgCUCCAu -3'
miRNA:   3'- -CCCGCCUaGUcUCGGAG----GCCgGAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.