miRNA display CGI


Results 1 - 20 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16213 3' -61.7 NC_004065.1 + 17302 0.72 0.442853
Target:  5'- cGGCGGAgacaacggccUCGGAGCCgccuucgagUCCGGUgUCCu -3'
miRNA:   3'- cCCGCCU----------AGUCUCGG---------AGGCCGgAGGu -5'
16213 3' -61.7 NC_004065.1 + 23626 0.67 0.693317
Target:  5'- cGGGUGGAcgggCGGcuGGCCUCgGGCCg--- -3'
miRNA:   3'- -CCCGCCUa---GUC--UCGGAGgCCGGaggu -5'
16213 3' -61.7 NC_004065.1 + 30136 0.71 0.486398
Target:  5'- aGGGCGGGUggCGGAGCgaCCGGaCCcagCCGc -3'
miRNA:   3'- -CCCGCCUA--GUCUCGgaGGCC-GGa--GGU- -5'
16213 3' -61.7 NC_004065.1 + 33755 0.74 0.340901
Target:  5'- -uGCaGGAgUCGGAgGCCUCgGGCCUCCAu -3'
miRNA:   3'- ccCG-CCU-AGUCU-CGGAGgCCGGAGGU- -5'
16213 3' -61.7 NC_004065.1 + 37301 0.67 0.702737
Target:  5'- cGGCGGccUCAaGAGCCcCCGGUCggcaCCAg -3'
miRNA:   3'- cCCGCCu-AGU-CUCGGaGGCCGGa---GGU- -5'
16213 3' -61.7 NC_004065.1 + 38222 0.66 0.757898
Target:  5'- cGGGgGGGUgGGAucCCUCCGGCUUg-- -3'
miRNA:   3'- -CCCgCCUAgUCUc-GGAGGCCGGAggu -5'
16213 3' -61.7 NC_004065.1 + 57925 0.72 0.43441
Target:  5'- -cGCGG-UCAGAGCCgccucccCCGGCCccUCCAc -3'
miRNA:   3'- ccCGCCuAGUCUCGGa------GGCCGG--AGGU- -5'
16213 3' -61.7 NC_004065.1 + 63056 0.66 0.765909
Target:  5'- gGGGCGGcgCagucgcaGGAGUCgCCGGUCgCCGg -3'
miRNA:   3'- -CCCGCCuaG-------UCUCGGaGGCCGGaGGU- -5'
16213 3' -61.7 NC_004065.1 + 74171 0.66 0.766794
Target:  5'- aGGCGGcGUUcGAGCCgaugaCCGcCCUCCAg -3'
miRNA:   3'- cCCGCC-UAGuCUCGGa----GGCcGGAGGU- -5'
16213 3' -61.7 NC_004065.1 + 80847 0.72 0.437776
Target:  5'- -aGCGGAUCGGAcgagcgccaggccagGUCUCCGGCCccCCGa -3'
miRNA:   3'- ccCGCCUAGUCU---------------CGGAGGCCGGa-GGU- -5'
16213 3' -61.7 NC_004065.1 + 91705 0.69 0.582582
Target:  5'- uGGGUgaggaggccucgcacGcGAUCAGGGCCgcguccaCGGCCUCCc -3'
miRNA:   3'- -CCCG---------------C-CUAGUCUCGGag-----GCCGGAGGu -5'
16213 3' -61.7 NC_004065.1 + 94741 0.7 0.559882
Target:  5'- cGGCGGAgacgcguuUCAGcgcgaaccuGGCCagCCGGuCCUCCAu -3'
miRNA:   3'- cCCGCCU--------AGUC---------UCGGa-GGCC-GGAGGU- -5'
16213 3' -61.7 NC_004065.1 + 110977 0.66 0.757002
Target:  5'- aGGaCGGGUCAGAGCgUCguguugacgagcaCGGCCauguaccacgcgUCCAa -3'
miRNA:   3'- cCC-GCCUAGUCUCGgAG-------------GCCGG------------AGGU- -5'
16213 3' -61.7 NC_004065.1 + 114939 0.67 0.683852
Target:  5'- cGGUGaucaucaucaGUCGGcGCCgCCGGCCUCCAg -3'
miRNA:   3'- cCCGCc---------UAGUCuCGGaGGCCGGAGGU- -5'
16213 3' -61.7 NC_004065.1 + 115902 0.71 0.495352
Target:  5'- -uGCGGcUCGGGGCCgucgUCGGCCUCg- -3'
miRNA:   3'- ccCGCCuAGUCUCGGa---GGCCGGAGgu -5'
16213 3' -61.7 NC_004065.1 + 116150 0.67 0.712105
Target:  5'- cGGCGGcUCGGGGCCgggUCGGUaggucucggaUCCAa -3'
miRNA:   3'- cCCGCCuAGUCUCGGa--GGCCGg---------AGGU- -5'
16213 3' -61.7 NC_004065.1 + 128466 0.68 0.67435
Target:  5'- cGGGCGcGAUCAGGcuaccacuGCCagcgCCGcugcugcugccGCCUCCAc -3'
miRNA:   3'- -CCCGC-CUAGUCU--------CGGa---GGC-----------CGGAGGU- -5'
16213 3' -61.7 NC_004065.1 + 132408 0.67 0.693316
Target:  5'- aGGGCGGcucuUCGGcAGCggCggCGGCCUCCu -3'
miRNA:   3'- -CCCGCCu---AGUC-UCGgaG--GCCGGAGGu -5'
16213 3' -61.7 NC_004065.1 + 136673 0.68 0.645689
Target:  5'- cGGGCGGGUCuG-GCCggcggcgggCCGGCUcgagcuuuuaUCCGc -3'
miRNA:   3'- -CCCGCCUAGuCuCGGa--------GGCCGG----------AGGU- -5'
16213 3' -61.7 NC_004065.1 + 139896 0.79 0.173701
Target:  5'- aGGUGGccgCGGGGCCUCCGGCCggcggcgCCAg -3'
miRNA:   3'- cCCGCCua-GUCUCGGAGGCCGGa------GGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.