miRNA display CGI


Results 1 - 20 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16213 3' -61.7 NC_004065.1 + 202338 1.1 0.001217
Target:  5'- cGGGCGGAUCAGAGCCUCCGGCCUCCAg -3'
miRNA:   3'- -CCCGCCUAGUCUCGGAGGCCGGAGGU- -5'
16213 3' -61.7 NC_004065.1 + 114939 0.67 0.683852
Target:  5'- cGGUGaucaucaucaGUCGGcGCCgCCGGCCUCCAg -3'
miRNA:   3'- cCCGCc---------UAGUCuCGGaGGCCGGAGGU- -5'
16213 3' -61.7 NC_004065.1 + 23626 0.67 0.693317
Target:  5'- cGGGUGGAcgggCGGcuGGCCUCgGGCCg--- -3'
miRNA:   3'- -CCCGCCUa---GUC--UCGGAGgCCGGaggu -5'
16213 3' -61.7 NC_004065.1 + 37301 0.67 0.702737
Target:  5'- cGGCGGccUCAaGAGCCcCCGGUCggcaCCAg -3'
miRNA:   3'- cCCGCCu-AGU-CUCGGaGGCCGGa---GGU- -5'
16213 3' -61.7 NC_004065.1 + 116150 0.67 0.712105
Target:  5'- cGGCGGcUCGGGGCCgggUCGGUaggucucggaUCCAa -3'
miRNA:   3'- cCCGCCuAGUCUCGGa--GGCCGg---------AGGU- -5'
16213 3' -61.7 NC_004065.1 + 176192 0.67 0.721413
Target:  5'- cGGCGGAggcagcuguuUCAGAGUCUgacgguucaCCGGCuCUCg- -3'
miRNA:   3'- cCCGCCU----------AGUCUCGGA---------GGCCG-GAGgu -5'
16213 3' -61.7 NC_004065.1 + 194235 0.66 0.73982
Target:  5'- cGGGaUGGGUCAGcuGCCUCUucGCCUCg- -3'
miRNA:   3'- -CCC-GCCUAGUCu-CGGAGGc-CGGAGgu -5'
16213 3' -61.7 NC_004065.1 + 74171 0.66 0.766794
Target:  5'- aGGCGGcGUUcGAGCCgaugaCCGcCCUCCAg -3'
miRNA:   3'- cCCGCC-UAGuCUCGGa----GGCcGGAGGU- -5'
16213 3' -61.7 NC_004065.1 + 145956 0.66 0.766794
Target:  5'- cGGCaGGAUCcGAGCCaUCGG-CUCCu -3'
miRNA:   3'- cCCG-CCUAGuCUCGGaGGCCgGAGGu -5'
16213 3' -61.7 NC_004065.1 + 128466 0.68 0.67435
Target:  5'- cGGGCGcGAUCAGGcuaccacuGCCagcgCCGcugcugcugccGCCUCCAc -3'
miRNA:   3'- -CCCGC-CUAGUCU--------CGGa---GGC-----------CGGAGGU- -5'
16213 3' -61.7 NC_004065.1 + 153326 0.69 0.615986
Target:  5'- cGGCGGAUCcuggagaAGGGCCUCCccaGGCUgaucgUCAg -3'
miRNA:   3'- cCCGCCUAG-------UCUCGGAGG---CCGGa----GGU- -5'
16213 3' -61.7 NC_004065.1 + 180655 0.77 0.229585
Target:  5'- aGGGUGGAUCAuGaAGCCUCCugauGGCC-CCAa -3'
miRNA:   3'- -CCCGCCUAGU-C-UCGGAGG----CCGGaGGU- -5'
16213 3' -61.7 NC_004065.1 + 147087 0.74 0.31314
Target:  5'- aGGGCcaaccuggccaGGGUCugggccGAGCuCUUCGGCCUCCAg -3'
miRNA:   3'- -CCCG-----------CCUAGu-----CUCG-GAGGCCGGAGGU- -5'
16213 3' -61.7 NC_004065.1 + 33755 0.74 0.340901
Target:  5'- -uGCaGGAgUCGGAgGCCUCgGGCCUCCAu -3'
miRNA:   3'- ccCG-CCU-AGUCU-CGGAGgCCGGAGGU- -5'
16213 3' -61.7 NC_004065.1 + 57925 0.72 0.43441
Target:  5'- -cGCGG-UCAGAGCCgccucccCCGGCCccUCCAc -3'
miRNA:   3'- ccCGCCuAGUCUCGGa------GGCCGG--AGGU- -5'
16213 3' -61.7 NC_004065.1 + 17302 0.72 0.442853
Target:  5'- cGGCGGAgacaacggccUCGGAGCCgccuucgagUCCGGUgUCCu -3'
miRNA:   3'- cCCGCCU----------AGUCUCGG---------AGGCCGgAGGu -5'
16213 3' -61.7 NC_004065.1 + 30136 0.71 0.486398
Target:  5'- aGGGCGGGUggCGGAGCgaCCGGaCCcagCCGc -3'
miRNA:   3'- -CCCGCCUA--GUCUCGgaGGCC-GGa--GGU- -5'
16213 3' -61.7 NC_004065.1 + 202140 0.7 0.541156
Target:  5'- cGGCaGGAUCGGAcggagGUC-CCGGCCgUCCAu -3'
miRNA:   3'- cCCG-CCUAGUCU-----CGGaGGCCGG-AGGU- -5'
16213 3' -61.7 NC_004065.1 + 146364 0.69 0.59782
Target:  5'- cGGCGGAU-----UCUCCGGCCUCUAc -3'
miRNA:   3'- cCCGCCUAgucucGGAGGCCGGAGGU- -5'
16213 3' -61.7 NC_004065.1 + 142652 0.66 0.766794
Target:  5'- cGGCGGAUgCAGGGCCUgCucuGCgaCCAu -3'
miRNA:   3'- cCCGCCUA-GUCUCGGAgGc--CGgaGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.