miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16214 3' -55.5 NC_004065.1 + 35114 0.66 0.97765
Target:  5'- cGGUG--UAUCGaGACGGCG-GCGCCg -3'
miRNA:   3'- cCCGCcuGUAGCaCUGCCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 205432 0.66 0.97765
Target:  5'- cGGCGG-CGgcgGUGGCGGCGacgacACGCg -3'
miRNA:   3'- cCCGCCuGUag-CACUGCCGUa----UGCGg -5'
16214 3' -55.5 NC_004065.1 + 30717 0.66 0.97765
Target:  5'- uGGCGGACG-CGuUGAaCGaCGUggACGCCa -3'
miRNA:   3'- cCCGCCUGUaGC-ACU-GCcGUA--UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 79640 0.66 0.97765
Target:  5'- -uGCGGGCGUgCGUGuCGGCGcugAUGaCCc -3'
miRNA:   3'- ccCGCCUGUA-GCACuGCCGUa--UGC-GG- -5'
16214 3' -55.5 NC_004065.1 + 112859 0.66 0.97765
Target:  5'- gGGGCGGACccCGUcGGCGcuGUcgGUGCCg -3'
miRNA:   3'- -CCCGCCUGuaGCA-CUGC--CGuaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 52669 0.66 0.97765
Target:  5'- uGGCGGugGcgGUGGCGG-AUGCGaCUg -3'
miRNA:   3'- cCCGCCugUagCACUGCCgUAUGC-GG- -5'
16214 3' -55.5 NC_004065.1 + 168548 0.66 0.97765
Target:  5'- cGGCGGugGUgGcaGCGGCGgcgGCGgCg -3'
miRNA:   3'- cCCGCCugUAgCacUGCCGUa--UGCgG- -5'
16214 3' -55.5 NC_004065.1 + 19759 0.66 0.97765
Target:  5'- gGGGCGuGCGgggGUGugGGCGacggaGCCg -3'
miRNA:   3'- -CCCGCcUGUag-CACugCCGUaug--CGG- -5'
16214 3' -55.5 NC_004065.1 + 105971 0.66 0.977422
Target:  5'- uGGuGCGGACGgacacguUCGaGACGGac-ACGCUg -3'
miRNA:   3'- -CC-CGCCUGU-------AGCaCUGCCguaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 133029 0.66 0.976727
Target:  5'- cGGCagcaGACGUCGcagcagcgcgacgGACGGCcgGCGCa -3'
miRNA:   3'- cCCGc---CUGUAGCa------------CUGCCGuaUGCGg -5'
16214 3' -55.5 NC_004065.1 + 207795 0.66 0.97529
Target:  5'- uGGGCGccGGCA-CGaUGACGGuCAUcGCGaCCg -3'
miRNA:   3'- -CCCGC--CUGUaGC-ACUGCC-GUA-UGC-GG- -5'
16214 3' -55.5 NC_004065.1 + 179676 0.66 0.97529
Target:  5'- cGGGgGGGCucgggAUCGcGGCGGUGgccACGCg -3'
miRNA:   3'- -CCCgCCUG-----UAGCaCUGCCGUa--UGCGg -5'
16214 3' -55.5 NC_004065.1 + 79344 0.66 0.97529
Target:  5'- -cGCGGAgGaCGagGGCGGCGcgGCGCUg -3'
miRNA:   3'- ccCGCCUgUaGCa-CUGCCGUa-UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 70483 0.66 0.97529
Target:  5'- cGGCguucagGGACAcCGUGAaGGCGauggcgGCGCCc -3'
miRNA:   3'- cCCG------CCUGUaGCACUgCCGUa-----UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 197484 0.66 0.97529
Target:  5'- gGGGgGGugAUgGUGGgGGUGUG-GCUa -3'
miRNA:   3'- -CCCgCCugUAgCACUgCCGUAUgCGG- -5'
16214 3' -55.5 NC_004065.1 + 168641 0.66 0.97529
Target:  5'- cGGGCGGAgc-CGgcGCGGCG-ACGUCg -3'
miRNA:   3'- -CCCGCCUguaGCacUGCCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 88961 0.66 0.97529
Target:  5'- cGGGCucGCG-CGUGAUGGUGgccaccugggGCGCCu -3'
miRNA:   3'- -CCCGccUGUaGCACUGCCGUa---------UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 69110 0.66 0.97529
Target:  5'- cGGUGGACGagcagGACGcGCGgcGCGCCg -3'
miRNA:   3'- cCCGCCUGUagca-CUGC-CGUa-UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 70319 0.66 0.97529
Target:  5'- -cGUGGuCGUCGUucuaucggcggcGACGGCGgcgaggaGCGCCu -3'
miRNA:   3'- ccCGCCuGUAGCA------------CUGCCGUa------UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 66633 0.66 0.97529
Target:  5'- cGGC-GACAUCGUcGGCuucGGCGcgguggGCGCCc -3'
miRNA:   3'- cCCGcCUGUAGCA-CUG---CCGUa-----UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.