miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16214 3' -55.5 NC_004065.1 + 168641 0.66 0.97529
Target:  5'- cGGGCGGAgc-CGgcGCGGCG-ACGUCg -3'
miRNA:   3'- -CCCGCCUguaGCacUGCCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 168548 0.66 0.97765
Target:  5'- cGGCGGugGUgGcaGCGGCGgcgGCGgCg -3'
miRNA:   3'- cCCGCCugUAgCacUGCCGUa--UGCgG- -5'
16214 3' -55.5 NC_004065.1 + 78282 0.66 0.967125
Target:  5'- -uGCGGugGUCGUaGCGGCucucgaGgGCCu -3'
miRNA:   3'- ccCGCCugUAGCAcUGCCGua----UgCGG- -5'
16214 3' -55.5 NC_004065.1 + 88961 0.66 0.97529
Target:  5'- cGGGCucGCG-CGUGAUGGUGgccaccugggGCGCCu -3'
miRNA:   3'- -CCCGccUGUaGCACUGCCGUa---------UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 70483 0.66 0.97529
Target:  5'- cGGCguucagGGACAcCGUGAaGGCGauggcgGCGCCc -3'
miRNA:   3'- cCCG------CCUGUaGCACUgCCGUa-----UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 139527 0.66 0.972753
Target:  5'- gGGGaucaGGACGUCG-GACGcCAagACGCg -3'
miRNA:   3'- -CCCg---CCUGUAGCaCUGCcGUa-UGCGg -5'
16214 3' -55.5 NC_004065.1 + 33265 0.66 0.967125
Target:  5'- uGGCGGAUcUUG-GGCaGGCGcagcACGCCg -3'
miRNA:   3'- cCCGCCUGuAGCaCUG-CCGUa---UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 69110 0.66 0.97529
Target:  5'- cGGUGGACGagcagGACGcGCGgcGCGCCg -3'
miRNA:   3'- cCCGCCUGUagca-CUGC-CGUa-UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 65839 0.66 0.967125
Target:  5'- cGGCGGAgAUCcgcgcgcacGACGaCAUGCGCUg -3'
miRNA:   3'- cCCGCCUgUAGca-------CUGCcGUAUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 194797 0.66 0.971957
Target:  5'- aGGGCGaucgucgagccccuGaACGcCGUGGCGGUGgcCGCCa -3'
miRNA:   3'- -CCCGC--------------C-UGUaGCACUGCCGUauGCGG- -5'
16214 3' -55.5 NC_004065.1 + 205432 0.66 0.97765
Target:  5'- cGGCGG-CGgcgGUGGCGGCGacgacACGCg -3'
miRNA:   3'- cCCGCCuGUag-CACUGCCGUa----UGCGg -5'
16214 3' -55.5 NC_004065.1 + 19482 0.66 0.972753
Target:  5'- cGGUGGAgcgccCAUCGUcgcgaugggGACGGCGgaacCGCUg -3'
miRNA:   3'- cCCGCCU-----GUAGCA---------CUGCCGUau--GCGG- -5'
16214 3' -55.5 NC_004065.1 + 143546 0.66 0.967125
Target:  5'- aGGgGGACAUCGguaagaaGACGGgucucGCGCUa -3'
miRNA:   3'- cCCgCCUGUAGCa------CUGCCgua--UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 124313 0.66 0.970034
Target:  5'- -cGCGGAUGUCGUGGuuCGcCGU-CGCCg -3'
miRNA:   3'- ccCGCCUGUAGCACU--GCcGUAuGCGG- -5'
16214 3' -55.5 NC_004065.1 + 52669 0.66 0.97765
Target:  5'- uGGCGGugGcgGUGGCGG-AUGCGaCUg -3'
miRNA:   3'- cCCGCCugUagCACUGCCgUAUGC-GG- -5'
16214 3' -55.5 NC_004065.1 + 68298 0.66 0.972753
Target:  5'- aGGGCucggcgacGGACuUCGaGACGGUGU-CGUCg -3'
miRNA:   3'- -CCCG--------CCUGuAGCaCUGCCGUAuGCGG- -5'
16214 3' -55.5 NC_004065.1 + 197484 0.66 0.97529
Target:  5'- gGGGgGGugAUgGUGGgGGUGUG-GCUa -3'
miRNA:   3'- -CCCgCCugUAgCACUgCCGUAUgCGG- -5'
16214 3' -55.5 NC_004065.1 + 76759 0.66 0.972753
Target:  5'- cGGCGGccucguCAUCGUc-CGGCGcauCGCCg -3'
miRNA:   3'- cCCGCCu-----GUAGCAcuGCCGUau-GCGG- -5'
16214 3' -55.5 NC_004065.1 + 116311 0.66 0.967125
Target:  5'- aGGUGucGGCGUCGgcGGCGGCAgcggcgacgGCGUCg -3'
miRNA:   3'- cCCGC--CUGUAGCa-CUGCCGUa--------UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 19759 0.66 0.97765
Target:  5'- gGGGCGuGCGgggGUGugGGCGacggaGCCg -3'
miRNA:   3'- -CCCGCcUGUag-CACugCCGUaug--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.