miRNA display CGI


Results 41 - 60 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16214 3' -55.5 NC_004065.1 + 143546 0.66 0.967125
Target:  5'- aGGgGGACAUCGguaagaaGACGGgucucGCGCUa -3'
miRNA:   3'- cCCgCCUGUAGCa------CUGCCgua--UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 108788 0.67 0.964022
Target:  5'- uGGCGG-CGUCGaaccuggcgUGGCGGcCGUucaGCCg -3'
miRNA:   3'- cCCGCCuGUAGC---------ACUGCC-GUAug-CGG- -5'
16214 3' -55.5 NC_004065.1 + 104908 0.67 0.964022
Target:  5'- cGGcGCGGugGUgccGGCGGCGUacACGCa -3'
miRNA:   3'- -CC-CGCCugUAgcaCUGCCGUA--UGCGg -5'
16214 3' -55.5 NC_004065.1 + 103724 0.67 0.964022
Target:  5'- uGGCGGGCGugaUCGUGAgcacgcacaccgUGGUgcagGCGCUg -3'
miRNA:   3'- cCCGCCUGU---AGCACU------------GCCGua--UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 203221 0.67 0.964022
Target:  5'- uGGGUGGGC-UCGgagcGACuGuCAUcACGCCg -3'
miRNA:   3'- -CCCGCCUGuAGCa---CUGcC-GUA-UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 113758 0.67 0.945436
Target:  5'- aGGCcgagGGACAgCGcGGCGGCAgACGaCCg -3'
miRNA:   3'- cCCG----CCUGUaGCaCUGCCGUaUGC-GG- -5'
16214 3' -55.5 NC_004065.1 + 215823 0.67 0.945436
Target:  5'- -cGUGcGAUAUUGUGACGGag-GCGUCa -3'
miRNA:   3'- ccCGC-CUGUAGCACUGCCguaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 31291 0.67 0.945436
Target:  5'- aGGaGGACGUCG--GCGGCGU-CGUCg -3'
miRNA:   3'- cCCgCCUGUAGCacUGCCGUAuGCGG- -5'
16214 3' -55.5 NC_004065.1 + 66628 0.67 0.945436
Target:  5'- cGGGCuGcGGCGcugCGUGGCGGac-GCGCUg -3'
miRNA:   3'- -CCCG-C-CUGUa--GCACUGCCguaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 88453 0.67 0.96072
Target:  5'- cGGGCgaGGGCGUCGcagGucuuGCGcGCG-ACGCCg -3'
miRNA:   3'- -CCCG--CCUGUAGCa--C----UGC-CGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 121759 0.67 0.960379
Target:  5'- -cGCGGACguccccaugacggGUCG-GACGGaaaGCGCCg -3'
miRNA:   3'- ccCGCCUG-------------UAGCaCUGCCguaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 109132 0.67 0.96072
Target:  5'- uGGcGgGGACGgcggGUGACGGCGguucCGUCg -3'
miRNA:   3'- -CC-CgCCUGUag--CACUGCCGUau--GCGG- -5'
16214 3' -55.5 NC_004065.1 + 71759 0.67 0.96072
Target:  5'- cGGuCGGugAcCGUGuuGGCGUcgauCGCCg -3'
miRNA:   3'- cCC-GCCugUaGCACugCCGUAu---GCGG- -5'
16214 3' -55.5 NC_004065.1 + 21963 0.67 0.96072
Target:  5'- aGGGCcGuCGUCGgcagGACGGUgaGgGCCg -3'
miRNA:   3'- -CCCGcCuGUAGCa---CUGCCGuaUgCGG- -5'
16214 3' -55.5 NC_004065.1 + 45988 0.67 0.960035
Target:  5'- cGGCgaccuGGGCGcCGUGGCGGCGUugaacucgggucUGCCg -3'
miRNA:   3'- cCCG-----CCUGUaGCACUGCCGUAu-----------GCGG- -5'
16214 3' -55.5 NC_004065.1 + 146597 0.67 0.964022
Target:  5'- gGGGUGGcCAUCGgggccGuCGGCGgg-GCCg -3'
miRNA:   3'- -CCCGCCuGUAGCa----CuGCCGUaugCGG- -5'
16214 3' -55.5 NC_004065.1 + 165974 0.67 0.955011
Target:  5'- cGGUGGACGUCGcucuucucgggguaGAUGGUacacAUGCGUCu -3'
miRNA:   3'- cCCGCCUGUAGCa-------------CUGCCG----UAUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 101515 0.67 0.957214
Target:  5'- -cGCGGagGCAUCGUcgucgguggaGGCGGCAgcagcagcgGCGCUg -3'
miRNA:   3'- ccCGCC--UGUAGCA----------CUGCCGUa--------UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 131028 0.67 0.957214
Target:  5'- cGGCGGAa--CGUGugGGCG-AC-CCu -3'
miRNA:   3'- cCCGCCUguaGCACugCCGUaUGcGG- -5'
16214 3' -55.5 NC_004065.1 + 204522 0.67 0.957214
Target:  5'- cGGCGaGAcCGUCGUGGuCGcCAgACGCCu -3'
miRNA:   3'- cCCGC-CU-GUAGCACU-GCcGUaUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.