miRNA display CGI


Results 61 - 80 of 194 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16214 3' -55.5 NC_004065.1 + 66628 0.67 0.945436
Target:  5'- cGGGCuGcGGCGcugCGUGGCGGac-GCGCUg -3'
miRNA:   3'- -CCCG-C-CUGUa--GCACUGCCguaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 88453 0.67 0.96072
Target:  5'- cGGGCgaGGGCGUCGcagGucuuGCGcGCG-ACGCCg -3'
miRNA:   3'- -CCCG--CCUGUAGCa--C----UGC-CGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 204522 0.67 0.957214
Target:  5'- cGGCGaGAcCGUCGUGGuCGcCAgACGCCu -3'
miRNA:   3'- cCCGC-CU-GUAGCACU-GCcGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 99379 0.67 0.949576
Target:  5'- uGGGCaugacGGGCGUgGgcugccUGGCGGCGgGCGCg -3'
miRNA:   3'- -CCCG-----CCUGUAgC------ACUGCCGUaUGCGg -5'
16214 3' -55.5 NC_004065.1 + 221996 0.67 0.945436
Target:  5'- cGGGCGGACcgugGUCGUGGgucUGGUAguaggACGg- -3'
miRNA:   3'- -CCCGCCUG----UAGCACU---GCCGUa----UGCgg -5'
16214 3' -55.5 NC_004065.1 + 153243 0.67 0.945436
Target:  5'- -aGCGuucgcCGUCGcGGCGGCgAUGCGCCg -3'
miRNA:   3'- ccCGCcu---GUAGCaCUGCCG-UAUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 6926 0.67 0.945436
Target:  5'- -uGCGGGCA-CGgccuCGGCGUcCGCCg -3'
miRNA:   3'- ccCGCCUGUaGCacu-GCCGUAuGCGG- -5'
16214 3' -55.5 NC_004065.1 + 104908 0.67 0.964022
Target:  5'- cGGcGCGGugGUgccGGCGGCGUacACGCa -3'
miRNA:   3'- -CC-CGCCugUAgcaCUGCCGUA--UGCGg -5'
16214 3' -55.5 NC_004065.1 + 108628 0.67 0.949576
Target:  5'- cGGCGGGCAgcuggugcugaUCGUGuucuGCGuGCcgcugGCGCCc -3'
miRNA:   3'- cCCGCCUGU-----------AGCAC----UGC-CGua---UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 103724 0.67 0.964022
Target:  5'- uGGCGGGCGugaUCGUGAgcacgcacaccgUGGUgcagGCGCUg -3'
miRNA:   3'- cCCGCCUGU---AGCACU------------GCCGua--UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 146597 0.67 0.964022
Target:  5'- gGGGUGGcCAUCGgggccGuCGGCGgg-GCCg -3'
miRNA:   3'- -CCCGCCuGUAGCa----CuGCCGUaugCGG- -5'
16214 3' -55.5 NC_004065.1 + 121759 0.67 0.960379
Target:  5'- -cGCGGACguccccaugacggGUCG-GACGGaaaGCGCCg -3'
miRNA:   3'- ccCGCCUG-------------UAGCaCUGCCguaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 31291 0.67 0.945436
Target:  5'- aGGaGGACGUCG--GCGGCGU-CGUCg -3'
miRNA:   3'- cCCgCCUGUAGCacUGCCGUAuGCGG- -5'
16214 3' -55.5 NC_004065.1 + 215823 0.67 0.945436
Target:  5'- -cGUGcGAUAUUGUGACGGag-GCGUCa -3'
miRNA:   3'- ccCGC-CUGUAGCACUGCCguaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 131028 0.67 0.957214
Target:  5'- cGGCGGAa--CGUGugGGCG-AC-CCu -3'
miRNA:   3'- cCCGCCUguaGCACugCCGUaUGcGG- -5'
16214 3' -55.5 NC_004065.1 + 14183 0.67 0.953501
Target:  5'- uGGGauggaaGGGCGUCGUGACGcCuc-CGUCa -3'
miRNA:   3'- -CCCg-----CCUGUAGCACUGCcGuauGCGG- -5'
16214 3' -55.5 NC_004065.1 + 38426 0.67 0.945436
Target:  5'- cGGGagaGGGCGUCuacgacGACGGUuuucgcGCGCCg -3'
miRNA:   3'- -CCCg--CCUGUAGca----CUGCCGua----UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 106135 0.67 0.964022
Target:  5'- gGGGC-GACGaCGUGcACGGCGcaccUGCGgCg -3'
miRNA:   3'- -CCCGcCUGUaGCAC-UGCCGU----AUGCgG- -5'
16214 3' -55.5 NC_004065.1 + 203221 0.67 0.964022
Target:  5'- uGGGUGGGC-UCGgagcGACuGuCAUcACGCCg -3'
miRNA:   3'- -CCCGCCUGuAGCa---CUGcC-GUA-UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 108788 0.67 0.964022
Target:  5'- uGGCGG-CGUCGaaccuggcgUGGCGGcCGUucaGCCg -3'
miRNA:   3'- cCCGCCuGUAGC---------ACUGCC-GUAug-CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.