miRNA display CGI


Results 81 - 100 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16214 3' -55.5 NC_004065.1 + 215823 0.67 0.945436
Target:  5'- -cGUGcGAUAUUGUGACGGag-GCGUCa -3'
miRNA:   3'- ccCGC-CUGUAGCACUGCCguaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 113758 0.67 0.945436
Target:  5'- aGGCcgagGGACAgCGcGGCGGCAgACGaCCg -3'
miRNA:   3'- cCCG----CCUGUaGCaCUGCCGUaUGC-GG- -5'
16214 3' -55.5 NC_004065.1 + 31291 0.67 0.945436
Target:  5'- aGGaGGACGUCG--GCGGCGU-CGUCg -3'
miRNA:   3'- cCCgCCUGUAGCacUGCCGUAuGCGG- -5'
16214 3' -55.5 NC_004065.1 + 66628 0.67 0.945436
Target:  5'- cGGGCuGcGGCGcugCGUGGCGGac-GCGCUg -3'
miRNA:   3'- -CCCG-C-CUGUa--GCACUGCCguaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 23626 0.68 0.936505
Target:  5'- cGGGUGGACGggCGgcUGGCcucgGGCcgACGCa -3'
miRNA:   3'- -CCCGCCUGUa-GC--ACUG----CCGuaUGCGg -5'
16214 3' -55.5 NC_004065.1 + 66039 0.68 0.93171
Target:  5'- aGGGUGGuaacgcacCAUCGcUGACGGCGgACaGCg -3'
miRNA:   3'- -CCCGCCu-------GUAGC-ACUGCCGUaUG-CGg -5'
16214 3' -55.5 NC_004065.1 + 151539 0.68 0.926694
Target:  5'- cGGGCGG-UGUCG-GGCGcGCuugACGCg -3'
miRNA:   3'- -CCCGCCuGUAGCaCUGC-CGua-UGCGg -5'
16214 3' -55.5 NC_004065.1 + 195909 0.68 0.93171
Target:  5'- cGGCGGAC-UCGUucuGcCGGCGcuuUAuCGCCg -3'
miRNA:   3'- cCCGCCUGuAGCA---CuGCCGU---AU-GCGG- -5'
16214 3' -55.5 NC_004065.1 + 78839 0.68 0.93171
Target:  5'- aGGCGGAgAagGguaggaagGGCGGCcgGCGCg -3'
miRNA:   3'- cCCGCCUgUagCa-------CUGCCGuaUGCGg -5'
16214 3' -55.5 NC_004065.1 + 36083 0.68 0.931218
Target:  5'- aGGaGCGG-CGUuaguggaaacaacCGUGGCGGCAacgGgGCCg -3'
miRNA:   3'- -CC-CGCCuGUA-------------GCACUGCCGUa--UgCGG- -5'
16214 3' -55.5 NC_004065.1 + 96762 0.68 0.94108
Target:  5'- aGGGC-GACggCGgaGGCGGCAUcGCgGCCg -3'
miRNA:   3'- -CCCGcCUGuaGCa-CUGCCGUA-UG-CGG- -5'
16214 3' -55.5 NC_004065.1 + 161838 0.68 0.93171
Target:  5'- cGGGCGGACGgggacggguUCG-GAgGGaGUACGUa -3'
miRNA:   3'- -CCCGCCUGU---------AGCaCUgCCgUAUGCGg -5'
16214 3' -55.5 NC_004065.1 + 115633 0.68 0.936036
Target:  5'- aGGCGGGgua-GgcugGACGGCAUgggucucGCGCCg -3'
miRNA:   3'- cCCGCCUguagCa---CUGCCGUA-------UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 118718 0.68 0.936505
Target:  5'- aGGgGGAgCGUCGUGucCGGCAggucuCGCa -3'
miRNA:   3'- cCCgCCU-GUAGCACu-GCCGUau---GCGg -5'
16214 3' -55.5 NC_004065.1 + 182522 0.68 0.936505
Target:  5'- gGGGCGGugGUCccaaucaagaUGGCGGCGUua-CCa -3'
miRNA:   3'- -CCCGCCugUAGc---------ACUGCCGUAugcGG- -5'
16214 3' -55.5 NC_004065.1 + 194413 0.68 0.942849
Target:  5'- cGGCGGGCGUUccaGACGGaguucuccccggGCGCCu -3'
miRNA:   3'- cCCGCCUGUAGca-CUGCCgua---------UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 47861 0.68 0.93171
Target:  5'- uGGCGG-CGUCGUaGugGGagaagACGUCg -3'
miRNA:   3'- cCCGCCuGUAGCA-CugCCgua--UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 62106 0.68 0.936505
Target:  5'- cGGCGGuCGUuacgcucgCGggaGGCGGCAUcguCGCCg -3'
miRNA:   3'- cCCGCCuGUA--------GCa--CUGCCGUAu--GCGG- -5'
16214 3' -55.5 NC_004065.1 + 68742 0.68 0.939731
Target:  5'- cGGGgucgcugccggacuCGGACAUCGcGGCGGUGcugGCgGCCu -3'
miRNA:   3'- -CCC--------------GCCUGUAGCaCUGCCGUa--UG-CGG- -5'
16214 3' -55.5 NC_004065.1 + 24467 0.68 0.94108
Target:  5'- gGGGCagcucGGACAUgggcgCGUaGAUGGCAc-CGCCg -3'
miRNA:   3'- -CCCG-----CCUGUA-----GCA-CUGCCGUauGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.