miRNA display CGI


Results 21 - 40 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16214 3' -55.5 NC_004065.1 + 79387 0.74 0.674247
Target:  5'- uGGGCGGACGcgcugaaacacacgaUCGUgGACaGCAUA-GCCg -3'
miRNA:   3'- -CCCGCCUGU---------------AGCA-CUGcCGUAUgCGG- -5'
16214 3' -55.5 NC_004065.1 + 136573 0.73 0.698575
Target:  5'- aGGGUuccGGCAUCGUGACcguggggcucaguGGCGUugGCUc -3'
miRNA:   3'- -CCCGc--CUGUAGCACUG-------------CCGUAugCGG- -5'
16214 3' -55.5 NC_004065.1 + 101426 0.73 0.737716
Target:  5'- gGGGCGGcugGCG-CGUG-CGG-AUGCGCCu -3'
miRNA:   3'- -CCCGCC---UGUaGCACuGCCgUAUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 18982 0.73 0.728279
Target:  5'- cGGGUGGACAUCugucaagaccUGACGGCG-ACGUUc -3'
miRNA:   3'- -CCCGCCUGUAGc---------ACUGCCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 174119 0.72 0.774527
Target:  5'- cGGcGCGGACucCGUGagagguGCGGCAUcggccuggACGCCg -3'
miRNA:   3'- -CC-CGCCUGuaGCAC------UGCCGUA--------UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 123026 0.72 0.756325
Target:  5'- -aGCGuGACGUCc-GACGGCGcUGCGCCu -3'
miRNA:   3'- ccCGC-CUGUAGcaCUGCCGU-AUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 191972 0.72 0.79226
Target:  5'- cGGCGGcACGUUG-GACGGguCGUGgGCCa -3'
miRNA:   3'- cCCGCC-UGUAGCaCUGCC--GUAUgCGG- -5'
16214 3' -55.5 NC_004065.1 + 139851 0.72 0.765481
Target:  5'- aGGCGGGCGaCGgcggaGGCGGCGga-GCCg -3'
miRNA:   3'- cCCGCCUGUaGCa----CUGCCGUaugCGG- -5'
16214 3' -55.5 NC_004065.1 + 192767 0.72 0.765481
Target:  5'- gGGGUGGuCGUCGUGucCGGUuuuCGCUg -3'
miRNA:   3'- -CCCGCCuGUAGCACu-GCCGuauGCGG- -5'
16214 3' -55.5 NC_004065.1 + 120222 0.72 0.783456
Target:  5'- uGGGCGGACcgcgCGUGAuCGGCGa--GUCu -3'
miRNA:   3'- -CCCGCCUGua--GCACU-GCCGUaugCGG- -5'
16214 3' -55.5 NC_004065.1 + 173439 0.72 0.79226
Target:  5'- gGGGUGacguucGACGUaccgGUGGCGGCGcucgACGCCa -3'
miRNA:   3'- -CCCGC------CUGUAg---CACUGCCGUa---UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 157954 0.72 0.79226
Target:  5'- aGGGUGGcguccaccggcuGgGUCGUGAUGGCGUACa-- -3'
miRNA:   3'- -CCCGCC------------UgUAGCACUGCCGUAUGcgg -5'
16214 3' -55.5 NC_004065.1 + 225057 0.72 0.774527
Target:  5'- -aGCGcACGUCGUGAUGGCGgcCGCUc -3'
miRNA:   3'- ccCGCcUGUAGCACUGCCGUauGCGG- -5'
16214 3' -55.5 NC_004065.1 + 199555 0.72 0.774527
Target:  5'- cGGGCGcGcccCAUCGUGccGCGGUccagACGCCg -3'
miRNA:   3'- -CCCGC-Cu--GUAGCAC--UGCCGua--UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 65440 0.72 0.76
Target:  5'- cGGCGGcCGUgGUGgcucuggagcgcgaaGCGGUcgGCGCCg -3'
miRNA:   3'- cCCGCCuGUAgCAC---------------UGCCGuaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 115584 0.72 0.756325
Target:  5'- cGGCGGugGUgGUGGCGGCGggagAUGa- -3'
miRNA:   3'- cCCGCCugUAgCACUGCCGUa---UGCgg -5'
16214 3' -55.5 NC_004065.1 + 67366 0.71 0.826059
Target:  5'- cGGUGuacauCAUCGUGACGGUcgGCGUg -3'
miRNA:   3'- cCCGCcu---GUAGCACUGCCGuaUGCGg -5'
16214 3' -55.5 NC_004065.1 + 48867 0.71 0.809457
Target:  5'- aGGGaGGACGUCGUGcGCGGUuguUAC-CCu -3'
miRNA:   3'- -CCCgCCUGUAGCAC-UGCCGu--AUGcGG- -5'
16214 3' -55.5 NC_004065.1 + 131829 0.71 0.825244
Target:  5'- cGGGCuGugGUagaacagCGUcuCGGCGUGCGCCg -3'
miRNA:   3'- -CCCGcCugUA-------GCAcuGCCGUAUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 135558 0.71 0.817836
Target:  5'- cGGGCGGACGaCGgggaGGCGGC---CGUCa -3'
miRNA:   3'- -CCCGCCUGUaGCa---CUGCCGuauGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.