Results 41 - 60 of 194 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16214 | 3' | -55.5 | NC_004065.1 | + | 48867 | 0.71 | 0.809457 |
Target: 5'- aGGGaGGACGUCGUGcGCGGUuguUAC-CCu -3' miRNA: 3'- -CCCgCCUGUAGCAC-UGCCGu--AUGcGG- -5' |
|||||||
16214 | 3' | -55.5 | NC_004065.1 | + | 200789 | 0.71 | 0.809457 |
Target: 5'- cGGCGGugG-CGggcGACGGCGUcucgGCGCg -3' miRNA: 3'- cCCGCCugUaGCa--CUGCCGUA----UGCGg -5' |
|||||||
16214 | 3' | -55.5 | NC_004065.1 | + | 154151 | 0.71 | 0.809457 |
Target: 5'- cGGGCGGugG-CGgcGGCGGCGgcgGCGgCu -3' miRNA: 3'- -CCCGCCugUaGCa-CUGCCGUa--UGCgG- -5' |
|||||||
16214 | 3' | -55.5 | NC_004065.1 | + | 135558 | 0.71 | 0.817836 |
Target: 5'- cGGGCGGACGaCGgggaGGCGGC---CGUCa -3' miRNA: 3'- -CCCGCCUGUaGCa---CUGCCGuauGCGG- -5' |
|||||||
16214 | 3' | -55.5 | NC_004065.1 | + | 67366 | 0.71 | 0.826059 |
Target: 5'- cGGUGuacauCAUCGUGACGGUcgGCGUg -3' miRNA: 3'- cCCGCcu---GUAGCACUGCCGuaUGCGg -5' |
|||||||
16214 | 3' | -55.5 | NC_004065.1 | + | 105227 | 0.71 | 0.817836 |
Target: 5'- cGGCGGACGUCGgacgaggaGAUGGUG-GCGCa -3' miRNA: 3'- cCCGCCUGUAGCa-------CUGCCGUaUGCGg -5' |
|||||||
16214 | 3' | -55.5 | NC_004065.1 | + | 28714 | 0.7 | 0.881417 |
Target: 5'- aGGGCGGAgAUCcUGuccgaggaggagaccGCGGUGgcggACGCCu -3' miRNA: 3'- -CCCGCCUgUAGcAC---------------UGCCGUa---UGCGG- -5' |
|||||||
16214 | 3' | -55.5 | NC_004065.1 | + | 103540 | 0.7 | 0.842009 |
Target: 5'- uGGGUGGAaacaguUCGUGACGGCGcaauaAC-CCa -3' miRNA: 3'- -CCCGCCUgu----AGCACUGCCGUa----UGcGG- -5' |
|||||||
16214 | 3' | -55.5 | NC_004065.1 | + | 195371 | 0.7 | 0.842009 |
Target: 5'- cGGCcuuccuGGACAcCGUGACGGCcgAgGUCu -3' miRNA: 3'- cCCG------CCUGUaGCACUGCCGuaUgCGG- -5' |
|||||||
16214 | 3' | -55.5 | NC_004065.1 | + | 200966 | 0.7 | 0.848959 |
Target: 5'- cGGCGGcuccaggaucgguGCGUgGUGACGGgucgcgACGCCg -3' miRNA: 3'- cCCGCC-------------UGUAgCACUGCCgua---UGCGG- -5' |
|||||||
16214 | 3' | -55.5 | NC_004065.1 | + | 124978 | 0.7 | 0.849723 |
Target: 5'- aGGGCGGcCAgaggcgcgggUCGUGcaGCGcGCucacGUACGCCa -3' miRNA: 3'- -CCCGCCuGU----------AGCAC--UGC-CG----UAUGCGG- -5' |
|||||||
16214 | 3' | -55.5 | NC_004065.1 | + | 63710 | 0.7 | 0.849723 |
Target: 5'- cGGGCcGugAUCGccUGGUGGUcgGCGCCg -3' miRNA: 3'- -CCCGcCugUAGC--ACUGCCGuaUGCGG- -5' |
|||||||
16214 | 3' | -55.5 | NC_004065.1 | + | 146756 | 0.7 | 0.849723 |
Target: 5'- -uGUGGGCGUCG--GCGGCGUcUGCCg -3' miRNA: 3'- ccCGCCUGUAGCacUGCCGUAuGCGG- -5' |
|||||||
16214 | 3' | -55.5 | NC_004065.1 | + | 156288 | 0.7 | 0.849723 |
Target: 5'- aGGCGGGaguaGcGGCGGCAgcagugGCGCCa -3' miRNA: 3'- cCCGCCUguagCaCUGCCGUa-----UGCGG- -5' |
|||||||
16214 | 3' | -55.5 | NC_004065.1 | + | 81892 | 0.7 | 0.871744 |
Target: 5'- cGGCGGGCGUgcUGAgguCGGCGUggACGUCg -3' miRNA: 3'- cCCGCCUGUAgcACU---GCCGUA--UGCGG- -5' |
|||||||
16214 | 3' | -55.5 | NC_004065.1 | + | 105372 | 0.7 | 0.842009 |
Target: 5'- cGGCGGACccggacUCGcUGACGGCcgGCGa- -3' miRNA: 3'- cCCGCCUGu-----AGC-ACUGCCGuaUGCgg -5' |
|||||||
16214 | 3' | -55.5 | NC_004065.1 | + | 163440 | 0.7 | 0.878694 |
Target: 5'- -cGCGucCAUCGUG-CGGCAgGCGCUc -3' miRNA: 3'- ccCGCcuGUAGCACuGCCGUaUGCGG- -5' |
|||||||
16214 | 3' | -55.5 | NC_004065.1 | + | 102028 | 0.7 | 0.878694 |
Target: 5'- cGGCGGGCcaccUCgGUGACccgcggcggccgGGCGUuaGCGCCg -3' miRNA: 3'- cCCGCCUGu---AG-CACUG------------CCGUA--UGCGG- -5' |
|||||||
16214 | 3' | -55.5 | NC_004065.1 | + | 85552 | 0.7 | 0.878694 |
Target: 5'- cGGCGcACGUCGUGuuCGGCGccaugguCGCCu -3' miRNA: 3'- cCCGCcUGUAGCACu-GCCGUau-----GCGG- -5' |
|||||||
16214 | 3' | -55.5 | NC_004065.1 | + | 101575 | 0.7 | 0.867478 |
Target: 5'- uGGUGGACA-CGUauucggacagggagaGGCGGCGcGCGUCg -3' miRNA: 3'- cCCGCCUGUaGCA---------------CUGCCGUaUGCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home