Results 81 - 100 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16214 | 3' | -55.5 | NC_004065.1 | + | 125754 | 0.68 | 0.928727 |
Target: 5'- aGGGCccGGCGUCGUGuaucGCGGgGUggcagagagucuugaGCGCCu -3' miRNA: 3'- -CCCGc-CUGUAGCAC----UGCCgUA---------------UGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 117192 | 0.68 | 0.926694 |
Target: 5'- gGGGCaGGCGUUgcgccaggcagGUGAUGGCGgggacggACGUCg -3' miRNA: 3'- -CCCGcCUGUAG-----------CACUGCCGUa------UGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 31038 | 0.68 | 0.919842 |
Target: 5'- cGGCccugccgagcgccaGGA-GUCuGuUGACGGCGUACGCCu -3' miRNA: 3'- cCCG--------------CCUgUAG-C-ACUGCCGUAUGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 105001 | 0.68 | 0.921456 |
Target: 5'- cGGGCGGcug-UGUGACgagccgcugcuGGCGUACGUg -3' miRNA: 3'- -CCCGCCuguaGCACUG-----------CCGUAUGCGg -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 39034 | 0.68 | 0.923578 |
Target: 5'- uGGGCGaACAguacuUCGUGACcccgcacacggagaaGGCAUucauCGCCu -3' miRNA: 3'- -CCCGCcUGU-----AGCACUG---------------CCGUAu---GCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 165428 | 0.68 | 0.926694 |
Target: 5'- aGGGCGGGCGUCGccGCGuGguUAuCGUg -3' miRNA: 3'- -CCCGCCUGUAGCacUGC-CguAU-GCGg -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 68543 | 0.68 | 0.926694 |
Target: 5'- aGGCGGcgGCGgagGUGACGGCGUcccgaAgGCCc -3' miRNA: 3'- cCCGCC--UGUag-CACUGCCGUA-----UgCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 151539 | 0.68 | 0.926694 |
Target: 5'- cGGGCGG-UGUCG-GGCGcGCuugACGCg -3' miRNA: 3'- -CCCGCCuGUAGCaCUGC-CGua-UGCGg -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 36083 | 0.68 | 0.931218 |
Target: 5'- aGGaGCGG-CGUuaguggaaacaacCGUGGCGGCAacgGgGCCg -3' miRNA: 3'- -CC-CGCCuGUA-------------GCACUGCCGUa--UgCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 23626 | 0.68 | 0.936505 |
Target: 5'- cGGGUGGACGggCGgcUGGCcucgGGCcgACGCa -3' miRNA: 3'- -CCCGCCUGUa-GC--ACUG----CCGuaUGCGg -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 24467 | 0.68 | 0.94108 |
Target: 5'- gGGGCagcucGGACAUgggcgCGUaGAUGGCAc-CGCCg -3' miRNA: 3'- -CCCG-----CCUGUA-----GCA-CUGCCGUauGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 68742 | 0.68 | 0.939731 |
Target: 5'- cGGGgucgcugccggacuCGGACAUCGcGGCGGUGcugGCgGCCu -3' miRNA: 3'- -CCC--------------GCCUGUAGCaCUGCCGUa--UG-CGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 62106 | 0.68 | 0.936505 |
Target: 5'- cGGCGGuCGUuacgcucgCGggaGGCGGCAUcguCGCCg -3' miRNA: 3'- cCCGCCuGUA--------GCa--CUGCCGUAu--GCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 194413 | 0.68 | 0.942849 |
Target: 5'- cGGCGGGCGUUccaGACGGaguucuccccggGCGCCu -3' miRNA: 3'- cCCGCCUGUAGca-CUGCCgua---------UGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 182522 | 0.68 | 0.936505 |
Target: 5'- gGGGCGGugGUCccaaucaagaUGGCGGCGUua-CCa -3' miRNA: 3'- -CCCGCCugUAGc---------ACUGCCGUAugcGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 23541 | 0.68 | 0.921456 |
Target: 5'- uGGGUGGGCuaCGUGACGa---ACGCCc -3' miRNA: 3'- -CCCGCCUGuaGCACUGCcguaUGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 115633 | 0.68 | 0.936036 |
Target: 5'- aGGCGGGgua-GgcugGACGGCAUgggucucGCGCCg -3' miRNA: 3'- cCCGCCUguagCa---CUGCCGUA-------UGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 161838 | 0.68 | 0.93171 |
Target: 5'- cGGGCGGACGgggacggguUCG-GAgGGaGUACGUa -3' miRNA: 3'- -CCCGCCUGU---------AGCaCUgCCgUAUGCGg -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 47861 | 0.68 | 0.93171 |
Target: 5'- uGGCGG-CGUCGUaGugGGagaagACGUCg -3' miRNA: 3'- cCCGCCuGUAGCA-CugCCgua--UGCGG- -5' |
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16214 | 3' | -55.5 | NC_004065.1 | + | 118718 | 0.68 | 0.936505 |
Target: 5'- aGGgGGAgCGUCGUGucCGGCAggucuCGCa -3' miRNA: 3'- cCCgCCU-GUAGCACu-GCCGUau---GCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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