miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16214 3' -55.5 NC_004065.1 + 202606 1.15 0.00248
Target:  5'- cGGGCGGACAUCGUGACGGCAUACGCCg -3'
miRNA:   3'- -CCCGCCUGUAGCACUGCCGUAUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 78017 0.79 0.399881
Target:  5'- aGGCGGgugACAUC--GAUGGCGUGCGCCg -3'
miRNA:   3'- cCCGCC---UGUAGcaCUGCCGUAUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 60693 0.79 0.424962
Target:  5'- aGGGCGaGACG--GUGAUGGCGcUGCGCCc -3'
miRNA:   3'- -CCCGC-CUGUagCACUGCCGU-AUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 99932 0.78 0.459815
Target:  5'- aGGGCGGGCGcCGa-ACGGCAU-CGCCg -3'
miRNA:   3'- -CCCGCCUGUaGCacUGCCGUAuGCGG- -5'
16214 3' -55.5 NC_004065.1 + 157011 0.77 0.486925
Target:  5'- aGGGCGucuCGcUCGUGGCGGCAUcguCGCCc -3'
miRNA:   3'- -CCCGCcu-GU-AGCACUGCCGUAu--GCGG- -5'
16214 3' -55.5 NC_004065.1 + 193647 0.77 0.486925
Target:  5'- cGGGaCGGAgGUCucUGugGGCAaGCGCCa -3'
miRNA:   3'- -CCC-GCCUgUAGc-ACugCCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 62379 0.77 0.486925
Target:  5'- cGGCGGGgGUgGUGGCGGCGggggugGCgGCCg -3'
miRNA:   3'- cCCGCCUgUAgCACUGCCGUa-----UG-CGG- -5'
16214 3' -55.5 NC_004065.1 + 166137 0.77 0.505411
Target:  5'- cGGCaGaGACGUCGgcgccGGCGGCAgcgGCGCCg -3'
miRNA:   3'- cCCG-C-CUGUAGCa----CUGCCGUa--UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 191384 0.76 0.55284
Target:  5'- aGGGCGcGuACAUCGUGAUGGgAU-CGUCg -3'
miRNA:   3'- -CCCGC-C-UGUAGCACUGCCgUAuGCGG- -5'
16214 3' -55.5 NC_004065.1 + 28915 0.76 0.558628
Target:  5'- aGGCGGACAUCGUGccuCGGUucaaggaaagcCGCCg -3'
miRNA:   3'- cCCGCCUGUAGCACu--GCCGuau--------GCGG- -5'
16214 3' -55.5 NC_004065.1 + 24977 0.75 0.598572
Target:  5'- uGGGUGGGCGUCccucggccuuuuguGUGugGGCGUccguggGCGCg -3'
miRNA:   3'- -CCCGCCUGUAG--------------CACugCCGUA------UGCGg -5'
16214 3' -55.5 NC_004065.1 + 68158 0.75 0.601515
Target:  5'- -cGCGGugAUCGcGGCGGCGcGCGCg -3'
miRNA:   3'- ccCGCCugUAGCaCUGCCGUaUGCGg -5'
16214 3' -55.5 NC_004065.1 + 111851 0.75 0.601515
Target:  5'- cGGCGG-CAgcCGUGACGGCcgcCGCCg -3'
miRNA:   3'- cCCGCCuGUa-GCACUGCCGuauGCGG- -5'
16214 3' -55.5 NC_004065.1 + 130076 0.75 0.621175
Target:  5'- cGGCGGugGUCGacuACGGCG-AUGCCg -3'
miRNA:   3'- cCCGCCugUAGCac-UGCCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 229671 0.75 0.631019
Target:  5'- aGGUGGGCGUCGgGGCGcGCGUcCGCUc -3'
miRNA:   3'- cCCGCCUGUAGCaCUGC-CGUAuGCGG- -5'
16214 3' -55.5 NC_004065.1 + 171957 0.74 0.640865
Target:  5'- aGGCGGGCG--GUGGCGGCGgcgGCGgCg -3'
miRNA:   3'- cCCGCCUGUagCACUGCCGUa--UGCgG- -5'
16214 3' -55.5 NC_004065.1 + 24509 0.74 0.650704
Target:  5'- aGGGCGGuCAUCGUG--GGCAUuauCGCa -3'
miRNA:   3'- -CCCGCCuGUAGCACugCCGUAu--GCGg -5'
16214 3' -55.5 NC_004065.1 + 138327 0.74 0.660529
Target:  5'- -cGCGGACAUCGUGGCcGCG-AUGUCg -3'
miRNA:   3'- ccCGCCUGUAGCACUGcCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 79387 0.74 0.674247
Target:  5'- uGGGCGGACGcgcugaaacacacgaUCGUgGACaGCAUA-GCCg -3'
miRNA:   3'- -CCCGCCUGU---------------AGCA-CUGcCGUAUgCGG- -5'
16214 3' -55.5 NC_004065.1 + 130588 0.74 0.680109
Target:  5'- aGGcGCGcGAUGUCGaGGCGGCGUcUGCCg -3'
miRNA:   3'- -CC-CGC-CUGUAGCaCUGCCGUAuGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.