miRNA display CGI


Results 41 - 60 of 194 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16214 3' -55.5 NC_004065.1 + 48867 0.71 0.809457
Target:  5'- aGGGaGGACGUCGUGcGCGGUuguUAC-CCu -3'
miRNA:   3'- -CCCgCCUGUAGCAC-UGCCGu--AUGcGG- -5'
16214 3' -55.5 NC_004065.1 + 105227 0.71 0.817836
Target:  5'- cGGCGGACGUCGgacgaggaGAUGGUG-GCGCa -3'
miRNA:   3'- cCCGCCUGUAGCa-------CUGCCGUaUGCGg -5'
16214 3' -55.5 NC_004065.1 + 135558 0.71 0.817836
Target:  5'- cGGGCGGACGaCGgggaGGCGGC---CGUCa -3'
miRNA:   3'- -CCCGCCUGUaGCa---CUGCCGuauGCGG- -5'
16214 3' -55.5 NC_004065.1 + 131829 0.71 0.825244
Target:  5'- cGGGCuGugGUagaacagCGUcuCGGCGUGCGCCg -3'
miRNA:   3'- -CCCGcCugUA-------GCAcuGCCGUAUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 67366 0.71 0.826059
Target:  5'- cGGUGuacauCAUCGUGACGGUcgGCGUg -3'
miRNA:   3'- cCCGCcu---GUAGCACUGCCGuaUGCGg -5'
16214 3' -55.5 NC_004065.1 + 41265 0.71 0.834119
Target:  5'- uGGGCGGucGCgAUCGcccugGugGGCuucgccgccGUGCGCCu -3'
miRNA:   3'- -CCCGCC--UG-UAGCa----CugCCG---------UAUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 105372 0.7 0.842009
Target:  5'- cGGCGGACccggacUCGcUGACGGCcgGCGa- -3'
miRNA:   3'- cCCGCCUGu-----AGC-ACUGCCGuaUGCgg -5'
16214 3' -55.5 NC_004065.1 + 103540 0.7 0.842009
Target:  5'- uGGGUGGAaacaguUCGUGACGGCGcaauaAC-CCa -3'
miRNA:   3'- -CCCGCCUgu----AGCACUGCCGUa----UGcGG- -5'
16214 3' -55.5 NC_004065.1 + 195371 0.7 0.842009
Target:  5'- cGGCcuuccuGGACAcCGUGACGGCcgAgGUCu -3'
miRNA:   3'- cCCG------CCUGUaGCACUGCCGuaUgCGG- -5'
16214 3' -55.5 NC_004065.1 + 200966 0.7 0.848959
Target:  5'- cGGCGGcuccaggaucgguGCGUgGUGACGGgucgcgACGCCg -3'
miRNA:   3'- cCCGCC-------------UGUAgCACUGCCgua---UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 124978 0.7 0.849723
Target:  5'- aGGGCGGcCAgaggcgcgggUCGUGcaGCGcGCucacGUACGCCa -3'
miRNA:   3'- -CCCGCCuGU----------AGCAC--UGC-CG----UAUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 63710 0.7 0.849723
Target:  5'- cGGGCcGugAUCGccUGGUGGUcgGCGCCg -3'
miRNA:   3'- -CCCGcCugUAGC--ACUGCCGuaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 156288 0.7 0.849723
Target:  5'- aGGCGGGaguaGcGGCGGCAgcagugGCGCCa -3'
miRNA:   3'- cCCGCCUguagCaCUGCCGUa-----UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 146756 0.7 0.849723
Target:  5'- -uGUGGGCGUCG--GCGGCGUcUGCCg -3'
miRNA:   3'- ccCGCCUGUAGCacUGCCGUAuGCGG- -5'
16214 3' -55.5 NC_004065.1 + 101575 0.7 0.867478
Target:  5'- uGGUGGACA-CGUauucggacagggagaGGCGGCGcGCGUCg -3'
miRNA:   3'- cCCGCCUGUaGCA---------------CUGCCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 81892 0.7 0.871744
Target:  5'- cGGCGGGCGUgcUGAgguCGGCGUggACGUCg -3'
miRNA:   3'- cCCGCCUGUAgcACU---GCCGUA--UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 85552 0.7 0.878694
Target:  5'- cGGCGcACGUCGUGuuCGGCGccaugguCGCCu -3'
miRNA:   3'- cCCGCcUGUAGCACu-GCCGUau-----GCGG- -5'
16214 3' -55.5 NC_004065.1 + 102028 0.7 0.878694
Target:  5'- cGGCGGGCcaccUCgGUGACccgcggcggccgGGCGUuaGCGCCg -3'
miRNA:   3'- cCCGCCUGu---AG-CACUG------------CCGUA--UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 163440 0.7 0.878694
Target:  5'- -cGCGucCAUCGUG-CGGCAgGCGCUc -3'
miRNA:   3'- ccCGCcuGUAGCACuGCCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 28714 0.7 0.881417
Target:  5'- aGGGCGGAgAUCcUGuccgaggaggagaccGCGGUGgcggACGCCu -3'
miRNA:   3'- -CCCGCCUgUAGcAC---------------UGCCGUa---UGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.