miRNA display CGI


Results 61 - 80 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16214 3' -55.5 NC_004065.1 + 49655 0.69 0.88544
Target:  5'- cGGUGGACcaguuuccCGUGGCGGUgc-CGCCg -3'
miRNA:   3'- cCCGCCUGua------GCACUGCCGuauGCGG- -5'
16214 3' -55.5 NC_004065.1 + 126231 0.69 0.88544
Target:  5'- aGGCGGGCGUcuucacgccCGUG-CGGCGgaucgaGCCg -3'
miRNA:   3'- cCCGCCUGUA---------GCACuGCCGUaug---CGG- -5'
16214 3' -55.5 NC_004065.1 + 112969 0.69 0.891335
Target:  5'- cGGcCGaGACGcaagaucagaucuUCGUGACGGCGUuCGCg -3'
miRNA:   3'- cCC-GC-CUGU-------------AGCACUGCCGUAuGCGg -5'
16214 3' -55.5 NC_004065.1 + 25395 0.69 0.891979
Target:  5'- gGGGCGGACAg---GGCGcauauccauGCAgACGCCc -3'
miRNA:   3'- -CCCGCCUGUagcaCUGC---------CGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 31616 0.69 0.891979
Target:  5'- -cGUGGACGgcaaguUCGUG-CGGCugacgACGCCg -3'
miRNA:   3'- ccCGCCUGU------AGCACuGCCGua---UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 200300 0.69 0.891979
Target:  5'- cGGaGGAucuCAUCGUccugGGCGGCGUcCGCCg -3'
miRNA:   3'- cCCgCCU---GUAGCA----CUGCCGUAuGCGG- -5'
16214 3' -55.5 NC_004065.1 + 41930 0.69 0.898307
Target:  5'- uGGCGGugaccuacuacGCGUCGUGcACGGCcggguucucgACGCUg -3'
miRNA:   3'- cCCGCC-----------UGUAGCAC-UGCCGua--------UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 109869 0.69 0.898307
Target:  5'- cGGGCGGugccaccgGCGUCGccGCGGCc-GCGUCg -3'
miRNA:   3'- -CCCGCC--------UGUAGCacUGCCGuaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 200875 0.69 0.898307
Target:  5'- cGGGCGGugGcgaaucgucggUCGUGuaGCGGUAc-UGCCg -3'
miRNA:   3'- -CCCGCCugU-----------AGCAC--UGCCGUauGCGG- -5'
16214 3' -55.5 NC_004065.1 + 110219 0.69 0.898307
Target:  5'- aGGGaagaGGGCuUCGccGGCGGC-UGCGUCa -3'
miRNA:   3'- -CCCg---CCUGuAGCa-CUGCCGuAUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 35196 0.69 0.898307
Target:  5'- cGGCcuGGAgAaCGUGGCGGCcacCGCCa -3'
miRNA:   3'- cCCG--CCUgUaGCACUGCCGuauGCGG- -5'
16214 3' -55.5 NC_004065.1 + 91189 0.69 0.902001
Target:  5'- -cGCGGAagcgccgucggCGUGcGCGGCAUcgGCGCCg -3'
miRNA:   3'- ccCGCCUgua--------GCAC-UGCCGUA--UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 151426 0.69 0.904421
Target:  5'- cGGCGcgacGACGUCGcguucGACGGCG-ACGUCg -3'
miRNA:   3'- cCCGC----CUGUAGCa----CUGCCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 153623 0.69 0.905021
Target:  5'- cGGGCGG-CGccacUCGgacGGCGGCGagcucauccgcggcgGCGCCg -3'
miRNA:   3'- -CCCGCCuGU----AGCa--CUGCCGUa--------------UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 74126 0.69 0.910318
Target:  5'- aGGGCacgaGGACGUCGaGGCGG-GUGCccggGCCg -3'
miRNA:   3'- -CCCG----CCUGUAGCaCUGCCgUAUG----CGG- -5'
16214 3' -55.5 NC_004065.1 + 128155 0.69 0.910318
Target:  5'- cGGCGu-CGUCGUcugcGGCGGCGauaGCGCCc -3'
miRNA:   3'- cCCGCcuGUAGCA----CUGCCGUa--UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 27209 0.69 0.910318
Target:  5'- uGGCGGcgGUCGUGGuCGGCA-GCGUg -3'
miRNA:   3'- cCCGCCugUAGCACU-GCCGUaUGCGg -5'
16214 3' -55.5 NC_004065.1 + 184844 0.69 0.910318
Target:  5'- uGGGUucggccgagGGAUcgaGUCGagcgGGCGGCGggACGCCg -3'
miRNA:   3'- -CCCG---------CCUG---UAGCa---CUGCCGUa-UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 119836 0.69 0.915997
Target:  5'- cGGGCGG-CGgcgCGUcGCGGC---CGCCg -3'
miRNA:   3'- -CCCGCCuGUa--GCAcUGCCGuauGCGG- -5'
16214 3' -55.5 NC_004065.1 + 31038 0.68 0.919842
Target:  5'- cGGCccugccgagcgccaGGA-GUCuGuUGACGGCGUACGCCu -3'
miRNA:   3'- cCCG--------------CCUgUAG-C-ACUGCCGUAUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.