miRNA display CGI


Results 81 - 100 of 194 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16214 3' -55.5 NC_004065.1 + 105001 0.68 0.921456
Target:  5'- cGGGCGGcug-UGUGACgagccgcugcuGGCGUACGUg -3'
miRNA:   3'- -CCCGCCuguaGCACUG-----------CCGUAUGCGg -5'
16214 3' -55.5 NC_004065.1 + 23541 0.68 0.921456
Target:  5'- uGGGUGGGCuaCGUGACGa---ACGCCc -3'
miRNA:   3'- -CCCGCCUGuaGCACUGCcguaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 39034 0.68 0.923578
Target:  5'- uGGGCGaACAguacuUCGUGACcccgcacacggagaaGGCAUucauCGCCu -3'
miRNA:   3'- -CCCGCcUGU-----AGCACUG---------------CCGUAu---GCGG- -5'
16214 3' -55.5 NC_004065.1 + 117192 0.68 0.926694
Target:  5'- gGGGCaGGCGUUgcgccaggcagGUGAUGGCGgggacggACGUCg -3'
miRNA:   3'- -CCCGcCUGUAG-----------CACUGCCGUa------UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 162446 0.68 0.926694
Target:  5'- cGGCGaGaucaGCGUCGUG-CGGCA-GCGCg -3'
miRNA:   3'- cCCGC-C----UGUAGCACuGCCGUaUGCGg -5'
16214 3' -55.5 NC_004065.1 + 165428 0.68 0.926694
Target:  5'- aGGGCGGGCGUCGccGCGuGguUAuCGUg -3'
miRNA:   3'- -CCCGCCUGUAGCacUGC-CguAU-GCGg -5'
16214 3' -55.5 NC_004065.1 + 151539 0.68 0.926694
Target:  5'- cGGGCGG-UGUCG-GGCGcGCuugACGCg -3'
miRNA:   3'- -CCCGCCuGUAGCaCUGC-CGua-UGCGg -5'
16214 3' -55.5 NC_004065.1 + 68543 0.68 0.926694
Target:  5'- aGGCGGcgGCGgagGUGACGGCGUcccgaAgGCCc -3'
miRNA:   3'- cCCGCC--UGUag-CACUGCCGUA-----UgCGG- -5'
16214 3' -55.5 NC_004065.1 + 165083 0.68 0.927205
Target:  5'- aGGCGGugGgucaguaggcgccgUCGUcucugaGGCGGCGUcccgcccggcgacugGCGCCg -3'
miRNA:   3'- cCCGCCugU--------------AGCA------CUGCCGUA---------------UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 125754 0.68 0.928727
Target:  5'- aGGGCccGGCGUCGUGuaucGCGGgGUggcagagagucuugaGCGCCu -3'
miRNA:   3'- -CCCGc-CUGUAGCAC----UGCCgUA---------------UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 36083 0.68 0.931218
Target:  5'- aGGaGCGG-CGUuaguggaaacaacCGUGGCGGCAacgGgGCCg -3'
miRNA:   3'- -CC-CGCCuGUA-------------GCACUGCCGUa--UgCGG- -5'
16214 3' -55.5 NC_004065.1 + 47861 0.68 0.93171
Target:  5'- uGGCGG-CGUCGUaGugGGagaagACGUCg -3'
miRNA:   3'- cCCGCCuGUAGCA-CugCCgua--UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 78839 0.68 0.93171
Target:  5'- aGGCGGAgAagGguaggaagGGCGGCcgGCGCg -3'
miRNA:   3'- cCCGCCUgUagCa-------CUGCCGuaUGCGg -5'
16214 3' -55.5 NC_004065.1 + 66039 0.68 0.93171
Target:  5'- aGGGUGGuaacgcacCAUCGcUGACGGCGgACaGCg -3'
miRNA:   3'- -CCCGCCu-------GUAGC-ACUGCCGUaUG-CGg -5'
16214 3' -55.5 NC_004065.1 + 105450 0.68 0.93171
Target:  5'- uGGcGaCGGACGagaaCGUGACGGCGaaccagGCgGCCg -3'
miRNA:   3'- -CC-C-GCCUGUa---GCACUGCCGUa-----UG-CGG- -5'
16214 3' -55.5 NC_004065.1 + 168179 0.68 0.93171
Target:  5'- gGGGCGcGACA-----GCGGCGcgACGCCu -3'
miRNA:   3'- -CCCGC-CUGUagcacUGCCGUa-UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 120222 0.68 0.93171
Target:  5'- aGGGCGuucuCGUCGaacgUGcccGCGGCGUaGCGCCu -3'
miRNA:   3'- -CCCGCcu--GUAGC----AC---UGCCGUA-UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 195909 0.68 0.93171
Target:  5'- cGGCGGAC-UCGUucuGcCGGCGcuuUAuCGCCg -3'
miRNA:   3'- cCCGCCUGuAGCA---CuGCCGU---AU-GCGG- -5'
16214 3' -55.5 NC_004065.1 + 161838 0.68 0.93171
Target:  5'- cGGGCGGACGgggacggguUCG-GAgGGaGUACGUa -3'
miRNA:   3'- -CCCGCCUGU---------AGCaCUgCCgUAUGCGg -5'
16214 3' -55.5 NC_004065.1 + 120412 0.68 0.93509
Target:  5'- uGGUGGGCAccgcggcccgggggUCGagcGCGGCcugAUACGCCg -3'
miRNA:   3'- cCCGCCUGU--------------AGCac-UGCCG---UAUGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.