miRNA display CGI


Results 21 - 40 of 194 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16214 3' -55.5 NC_004065.1 + 54485 0.66 0.974548
Target:  5'- uGGuGUGGAuacugaCAUCGuUGGCGGCGUuacucuuucggcggACGCg -3'
miRNA:   3'- -CC-CGCCU------GUAGC-ACUGCCGUA--------------UGCGg -5'
16214 3' -55.5 NC_004065.1 + 197576 0.66 0.972753
Target:  5'- uGGUGGGCAU----GCGGC-UGCGCUa -3'
miRNA:   3'- cCCGCCUGUAgcacUGCCGuAUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 189749 0.66 0.972753
Target:  5'- gGGGagacgaugaGGAUugcgGUGGCGGCAguggACGCUg -3'
miRNA:   3'- -CCCg--------CCUGuag-CACUGCCGUa---UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 19482 0.66 0.972753
Target:  5'- cGGUGGAgcgccCAUCGUcgcgaugggGACGGCGgaacCGCUg -3'
miRNA:   3'- cCCGCCU-----GUAGCA---------CUGCCGUau--GCGG- -5'
16214 3' -55.5 NC_004065.1 + 121282 0.66 0.972753
Target:  5'- uGGGCuugaaGACccgCGUGAgGGCGacgcGCGCCc -3'
miRNA:   3'- -CCCGc----CUGua-GCACUgCCGUa---UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 76759 0.66 0.972753
Target:  5'- cGGCGGccucguCAUCGUc-CGGCGcauCGCCg -3'
miRNA:   3'- cCCGCCu-----GUAGCAcuGCCGUau-GCGG- -5'
16214 3' -55.5 NC_004065.1 + 68298 0.66 0.972753
Target:  5'- aGGGCucggcgacGGACuUCGaGACGGUGU-CGUCg -3'
miRNA:   3'- -CCCG--------CCUGuAGCaCUGCCGUAuGCGG- -5'
16214 3' -55.5 NC_004065.1 + 139527 0.66 0.972753
Target:  5'- gGGGaucaGGACGUCG-GACGcCAagACGCg -3'
miRNA:   3'- -CCCg---CCUGUAGCaCUGCcGUa-UGCGg -5'
16214 3' -55.5 NC_004065.1 + 61063 0.66 0.97249
Target:  5'- aGGGCacGACAucauguuUCGUGuCGGC--GCGCUg -3'
miRNA:   3'- -CCCGc-CUGU-------AGCACuGCCGuaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 194797 0.66 0.971957
Target:  5'- aGGGCGaucgucgagccccuGaACGcCGUGGCGGUGgcCGCCa -3'
miRNA:   3'- -CCCGC--------------C-UGUaGCACUGCCGUauGCGG- -5'
16214 3' -55.5 NC_004065.1 + 124313 0.66 0.970034
Target:  5'- -cGCGGAUGUCGUGGuuCGcCGU-CGCCg -3'
miRNA:   3'- ccCGCCUGUAGCACU--GCcGUAuGCGG- -5'
16214 3' -55.5 NC_004065.1 + 96138 0.66 0.970034
Target:  5'- aGGGUGGccCGUCGUuccgccCGGC--GCGCCg -3'
miRNA:   3'- -CCCGCCu-GUAGCAcu----GCCGuaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 198943 0.66 0.970034
Target:  5'- uGGCGGcCAagGccgccgccaUGAggaaGGCGUACGCCg -3'
miRNA:   3'- cCCGCCuGUagC---------ACUg---CCGUAUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 132408 0.66 0.968018
Target:  5'- aGGGCGGcucuucgGCAgCGgcGGCGGCcuccuucgacguguUGCGCCg -3'
miRNA:   3'- -CCCGCC-------UGUaGCa-CUGCCGu-------------AUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 48094 0.66 0.967125
Target:  5'- -cGCGGACc-UGUGGCGGCGgcggugGCGgCg -3'
miRNA:   3'- ccCGCCUGuaGCACUGCCGUa-----UGCgG- -5'
16214 3' -55.5 NC_004065.1 + 78282 0.66 0.967125
Target:  5'- -uGCGGugGUCGUaGCGGCucucgaGgGCCu -3'
miRNA:   3'- ccCGCCugUAGCAcUGCCGua----UgCGG- -5'
16214 3' -55.5 NC_004065.1 + 118017 0.66 0.967125
Target:  5'- cGGGCGaGAaacucuuguUGUCGUaGGCGGCccccucgaGCGCCu -3'
miRNA:   3'- -CCCGC-CU---------GUAGCA-CUGCCGua------UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 116311 0.66 0.967125
Target:  5'- aGGUGucGGCGUCGgcGGCGGCAgcggcgacgGCGUCg -3'
miRNA:   3'- cCCGC--CUGUAGCa-CUGCCGUa--------UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 65839 0.66 0.967125
Target:  5'- cGGCGGAgAUCcgcgcgcacGACGaCAUGCGCUg -3'
miRNA:   3'- cCCGCCUgUAGca-------CUGCcGUAUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 143546 0.66 0.967125
Target:  5'- aGGgGGACAUCGguaagaaGACGGgucucGCGCUa -3'
miRNA:   3'- cCCgCCUGUAGCa------CUGCCgua--UGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.