miRNA display CGI


Results 61 - 80 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16214 3' -55.5 NC_004065.1 + 45988 0.67 0.960035
Target:  5'- cGGCgaccuGGGCGcCGUGGCGGCGUugaacucgggucUGCCg -3'
miRNA:   3'- cCCG-----CCUGUaGCACUGCCGUAu-----------GCGG- -5'
16214 3' -55.5 NC_004065.1 + 204350 0.67 0.957214
Target:  5'- cGG-GGACGUCGUGAUGGgGggaggcACGUa -3'
miRNA:   3'- cCCgCCUGUAGCACUGCCgUa-----UGCGg -5'
16214 3' -55.5 NC_004065.1 + 101515 0.67 0.957214
Target:  5'- -cGCGGagGCAUCGUcgucgguggaGGCGGCAgcagcagcgGCGCUg -3'
miRNA:   3'- ccCGCC--UGUAGCA----------CUGCCGUa--------UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 131028 0.67 0.957214
Target:  5'- cGGCGGAa--CGUGugGGCG-AC-CCu -3'
miRNA:   3'- cCCGCCUguaGCACugCCGUaUGcGG- -5'
16214 3' -55.5 NC_004065.1 + 204522 0.67 0.957214
Target:  5'- cGGCGaGAcCGUCGUGGuCGcCAgACGCCu -3'
miRNA:   3'- cCCGC-CU-GUAGCACU-GCcGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 29976 0.67 0.957214
Target:  5'- uGGCGG-CggCGgcGGCGGCAgugguauCGCCa -3'
miRNA:   3'- cCCGCCuGuaGCa-CUGCCGUau-----GCGG- -5'
16214 3' -55.5 NC_004065.1 + 165974 0.67 0.955011
Target:  5'- cGGUGGACGUCGcucuucucgggguaGAUGGUacacAUGCGUCu -3'
miRNA:   3'- cCCGCCUGUAGCa-------------CUGCCG----UAUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 32959 0.67 0.953501
Target:  5'- cGGGCGucGACGUCGcGGCGgaGCAUGacggagGCCu -3'
miRNA:   3'- -CCCGC--CUGUAGCaCUGC--CGUAUg-----CGG- -5'
16214 3' -55.5 NC_004065.1 + 131240 0.67 0.953501
Target:  5'- gGGGUcucGGuCGUcucCGUGGCGGCGgacguucugcGCGCCu -3'
miRNA:   3'- -CCCG---CCuGUA---GCACUGCCGUa---------UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 14183 0.67 0.953501
Target:  5'- uGGGauggaaGGGCGUCGUGACGcCuc-CGUCa -3'
miRNA:   3'- -CCCg-----CCUGUAGCACUGCcGuauGCGG- -5'
16214 3' -55.5 NC_004065.1 + 19548 0.67 0.953118
Target:  5'- cGGCaGGAUgaacugcguggguGUCgGUGGCGGCGguaGCGUCg -3'
miRNA:   3'- cCCG-CCUG-------------UAG-CACUGCCGUa--UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 67114 0.67 0.953118
Target:  5'- -cGCuGGACGcCGUGcuggacaGCGGCGcGCGCCu -3'
miRNA:   3'- ccCG-CCUGUaGCAC-------UGCCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 99379 0.67 0.949576
Target:  5'- uGGGCaugacGGGCGUgGgcugccUGGCGGCGgGCGCg -3'
miRNA:   3'- -CCCG-----CCUGUAgC------ACUGCCGUaUGCGg -5'
16214 3' -55.5 NC_004065.1 + 169854 0.67 0.949576
Target:  5'- cGGGCcaGCGUCGaccugUGcAUGGCGgGCGCCg -3'
miRNA:   3'- -CCCGccUGUAGC-----AC-UGCCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 108628 0.67 0.949576
Target:  5'- cGGCGGGCAgcuggugcugaUCGUGuucuGCGuGCcgcugGCGCCc -3'
miRNA:   3'- cCCGCCUGU-----------AGCAC----UGC-CGua---UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 138560 0.67 0.949576
Target:  5'- cGGCGGAC----UGACGGCGacgGUGCCg -3'
miRNA:   3'- cCCGCCUGuagcACUGCCGUa--UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 31291 0.67 0.945436
Target:  5'- aGGaGGACGUCG--GCGGCGU-CGUCg -3'
miRNA:   3'- cCCgCCUGUAGCacUGCCGUAuGCGG- -5'
16214 3' -55.5 NC_004065.1 + 66628 0.67 0.945436
Target:  5'- cGGGCuGcGGCGcugCGUGGCGGac-GCGCUg -3'
miRNA:   3'- -CCCG-C-CUGUa--GCACUGCCguaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 113758 0.67 0.945436
Target:  5'- aGGCcgagGGACAgCGcGGCGGCAgACGaCCg -3'
miRNA:   3'- cCCG----CCUGUaGCaCUGCCGUaUGC-GG- -5'
16214 3' -55.5 NC_004065.1 + 153243 0.67 0.945436
Target:  5'- -aGCGuucgcCGUCGcGGCGGCgAUGCGCCg -3'
miRNA:   3'- ccCGCcu---GUAGCaCUGCCG-UAUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.