miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16214 3' -55.5 NC_004065.1 + 6926 0.67 0.945436
Target:  5'- -uGCGGGCA-CGgccuCGGCGUcCGCCg -3'
miRNA:   3'- ccCGCCUGUaGCacu-GCCGUAuGCGG- -5'
16214 3' -55.5 NC_004065.1 + 14183 0.67 0.953501
Target:  5'- uGGGauggaaGGGCGUCGUGACGcCuc-CGUCa -3'
miRNA:   3'- -CCCg-----CCUGUAGCACUGCcGuauGCGG- -5'
16214 3' -55.5 NC_004065.1 + 18982 0.73 0.728279
Target:  5'- cGGGUGGACAUCugucaagaccUGACGGCG-ACGUUc -3'
miRNA:   3'- -CCCGCCUGUAGc---------ACUGCCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 19482 0.66 0.972753
Target:  5'- cGGUGGAgcgccCAUCGUcgcgaugggGACGGCGgaacCGCUg -3'
miRNA:   3'- cCCGCCU-----GUAGCA---------CUGCCGUau--GCGG- -5'
16214 3' -55.5 NC_004065.1 + 19548 0.67 0.953118
Target:  5'- cGGCaGGAUgaacugcguggguGUCgGUGGCGGCGguaGCGUCg -3'
miRNA:   3'- cCCG-CCUG-------------UAG-CACUGCCGUa--UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 19759 0.66 0.97765
Target:  5'- gGGGCGuGCGgggGUGugGGCGacggaGCCg -3'
miRNA:   3'- -CCCGCcUGUag-CACugCCGUaug--CGG- -5'
16214 3' -55.5 NC_004065.1 + 21963 0.67 0.96072
Target:  5'- aGGGCcGuCGUCGgcagGACGGUgaGgGCCg -3'
miRNA:   3'- -CCCGcCuGUAGCa---CUGCCGuaUgCGG- -5'
16214 3' -55.5 NC_004065.1 + 23541 0.68 0.921456
Target:  5'- uGGGUGGGCuaCGUGACGa---ACGCCc -3'
miRNA:   3'- -CCCGCCUGuaGCACUGCcguaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 23626 0.68 0.936505
Target:  5'- cGGGUGGACGggCGgcUGGCcucgGGCcgACGCa -3'
miRNA:   3'- -CCCGCCUGUa-GC--ACUG----CCGuaUGCGg -5'
16214 3' -55.5 NC_004065.1 + 24467 0.68 0.94108
Target:  5'- gGGGCagcucGGACAUgggcgCGUaGAUGGCAc-CGCCg -3'
miRNA:   3'- -CCCG-----CCUGUA-----GCA-CUGCCGUauGCGG- -5'
16214 3' -55.5 NC_004065.1 + 24509 0.74 0.650704
Target:  5'- aGGGCGGuCAUCGUG--GGCAUuauCGCa -3'
miRNA:   3'- -CCCGCCuGUAGCACugCCGUAu--GCGg -5'
16214 3' -55.5 NC_004065.1 + 24977 0.75 0.598572
Target:  5'- uGGGUGGGCGUCccucggccuuuuguGUGugGGCGUccguggGCGCg -3'
miRNA:   3'- -CCCGCCUGUAG--------------CACugCCGUA------UGCGg -5'
16214 3' -55.5 NC_004065.1 + 25395 0.69 0.891979
Target:  5'- gGGGCGGACAg---GGCGcauauccauGCAgACGCCc -3'
miRNA:   3'- -CCCGCCUGUagcaCUGC---------CGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 27209 0.69 0.910318
Target:  5'- uGGCGGcgGUCGUGGuCGGCA-GCGUg -3'
miRNA:   3'- cCCGCCugUAGCACU-GCCGUaUGCGg -5'
16214 3' -55.5 NC_004065.1 + 28714 0.7 0.881417
Target:  5'- aGGGCGGAgAUCcUGuccgaggaggagaccGCGGUGgcggACGCCu -3'
miRNA:   3'- -CCCGCCUgUAGcAC---------------UGCCGUa---UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 28915 0.76 0.558628
Target:  5'- aGGCGGACAUCGUGccuCGGUucaaggaaagcCGCCg -3'
miRNA:   3'- cCCGCCUGUAGCACu--GCCGuau--------GCGG- -5'
16214 3' -55.5 NC_004065.1 + 29976 0.67 0.957214
Target:  5'- uGGCGG-CggCGgcGGCGGCAgugguauCGCCa -3'
miRNA:   3'- cCCGCCuGuaGCa-CUGCCGUau-----GCGG- -5'
16214 3' -55.5 NC_004065.1 + 30717 0.66 0.97765
Target:  5'- uGGCGGACG-CGuUGAaCGaCGUggACGCCa -3'
miRNA:   3'- cCCGCCUGUaGC-ACU-GCcGUA--UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 31006 0.71 0.809457
Target:  5'- gGGGUGGcgagauggagagGCcg-GUGACGGCGaACGCCa -3'
miRNA:   3'- -CCCGCC------------UGuagCACUGCCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 31038 0.68 0.919842
Target:  5'- cGGCccugccgagcgccaGGA-GUCuGuUGACGGCGUACGCCu -3'
miRNA:   3'- cCCG--------------CCUgUAG-C-ACUGCCGUAUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.