miRNA display CGI


Results 41 - 60 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16214 3' -55.5 NC_004065.1 + 61063 0.66 0.97249
Target:  5'- aGGGCacGACAucauguuUCGUGuCGGC--GCGCUg -3'
miRNA:   3'- -CCCGc-CUGU-------AGCACuGCCGuaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 61240 0.67 0.96072
Target:  5'- aGGGCGGAgAggaaggCGUcGAaGGCcUGCGCg -3'
miRNA:   3'- -CCCGCCUgUa-----GCA-CUgCCGuAUGCGg -5'
16214 3' -55.5 NC_004065.1 + 62106 0.68 0.936505
Target:  5'- cGGCGGuCGUuacgcucgCGggaGGCGGCAUcguCGCCg -3'
miRNA:   3'- cCCGCCuGUA--------GCa--CUGCCGUAu--GCGG- -5'
16214 3' -55.5 NC_004065.1 + 62379 0.77 0.486925
Target:  5'- cGGCGGGgGUgGUGGCGGCGggggugGCgGCCg -3'
miRNA:   3'- cCCGCCUgUAgCACUGCCGUa-----UG-CGG- -5'
16214 3' -55.5 NC_004065.1 + 63710 0.7 0.849723
Target:  5'- cGGGCcGugAUCGccUGGUGGUcgGCGCCg -3'
miRNA:   3'- -CCCGcCugUAGC--ACUGCCGuaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 65440 0.72 0.76
Target:  5'- cGGCGGcCGUgGUGgcucuggagcgcgaaGCGGUcgGCGCCg -3'
miRNA:   3'- cCCGCCuGUAgCAC---------------UGCCGuaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 65839 0.66 0.967125
Target:  5'- cGGCGGAgAUCcgcgcgcacGACGaCAUGCGCUg -3'
miRNA:   3'- cCCGCCUgUAGca-------CUGCcGUAUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 66039 0.68 0.93171
Target:  5'- aGGGUGGuaacgcacCAUCGcUGACGGCGgACaGCg -3'
miRNA:   3'- -CCCGCCu-------GUAGC-ACUGCCGUaUG-CGg -5'
16214 3' -55.5 NC_004065.1 + 66628 0.67 0.945436
Target:  5'- cGGGCuGcGGCGcugCGUGGCGGac-GCGCUg -3'
miRNA:   3'- -CCCG-C-CUGUa--GCACUGCCguaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 66633 0.66 0.97529
Target:  5'- cGGC-GACAUCGUcGGCuucGGCGcgguggGCGCCc -3'
miRNA:   3'- cCCGcCUGUAGCA-CUG---CCGUa-----UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 67114 0.67 0.953118
Target:  5'- -cGCuGGACGcCGUGcuggacaGCGGCGcGCGCCu -3'
miRNA:   3'- ccCG-CCUGUaGCAC-------UGCCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 67366 0.71 0.826059
Target:  5'- cGGUGuacauCAUCGUGACGGUcgGCGUg -3'
miRNA:   3'- cCCGCcu---GUAGCACUGCCGuaUGCGg -5'
16214 3' -55.5 NC_004065.1 + 67749 0.67 0.963053
Target:  5'- -aGCGGcGCcgCGUccGACGGCGUgacgaacggcgcggGCGCCc -3'
miRNA:   3'- ccCGCC-UGuaGCA--CUGCCGUA--------------UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 68158 0.75 0.601515
Target:  5'- -cGCGGugAUCGcGGCGGCGcGCGCg -3'
miRNA:   3'- ccCGCCugUAGCaCUGCCGUaUGCGg -5'
16214 3' -55.5 NC_004065.1 + 68298 0.66 0.972753
Target:  5'- aGGGCucggcgacGGACuUCGaGACGGUGU-CGUCg -3'
miRNA:   3'- -CCCG--------CCUGuAGCaCUGCCGUAuGCGG- -5'
16214 3' -55.5 NC_004065.1 + 68543 0.68 0.926694
Target:  5'- aGGCGGcgGCGgagGUGACGGCGUcccgaAgGCCc -3'
miRNA:   3'- cCCGCC--UGUag-CACUGCCGUA-----UgCGG- -5'
16214 3' -55.5 NC_004065.1 + 68742 0.68 0.939731
Target:  5'- cGGGgucgcugccggacuCGGACAUCGcGGCGGUGcugGCgGCCu -3'
miRNA:   3'- -CCC--------------GCCUGUAGCaCUGCCGUa--UG-CGG- -5'
16214 3' -55.5 NC_004065.1 + 69110 0.66 0.97529
Target:  5'- cGGUGGACGagcagGACGcGCGgcGCGCCg -3'
miRNA:   3'- cCCGCCUGUagca-CUGC-CGUa-UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 69451 0.67 0.964022
Target:  5'- --aCGGACAUCGUGuCG-CAgaugucGCGCCg -3'
miRNA:   3'- cccGCCUGUAGCACuGCcGUa-----UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 70319 0.66 0.97529
Target:  5'- -cGUGGuCGUCGUucuaucggcggcGACGGCGgcgaggaGCGCCu -3'
miRNA:   3'- ccCGCCuGUAGCA------------CUGCCGUa------UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.