miRNA display CGI


Results 61 - 80 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16214 3' -55.5 NC_004065.1 + 70483 0.66 0.97529
Target:  5'- cGGCguucagGGACAcCGUGAaGGCGauggcgGCGCCc -3'
miRNA:   3'- cCCG------CCUGUaGCACUgCCGUa-----UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 71759 0.67 0.96072
Target:  5'- cGGuCGGugAcCGUGuuGGCGUcgauCGCCg -3'
miRNA:   3'- cCC-GCCugUaGCACugCCGUAu---GCGG- -5'
16214 3' -55.5 NC_004065.1 + 74126 0.69 0.910318
Target:  5'- aGGGCacgaGGACGUCGaGGCGG-GUGCccggGCCg -3'
miRNA:   3'- -CCCG----CCUGUAGCaCUGCCgUAUG----CGG- -5'
16214 3' -55.5 NC_004065.1 + 76759 0.66 0.972753
Target:  5'- cGGCGGccucguCAUCGUc-CGGCGcauCGCCg -3'
miRNA:   3'- cCCGCCu-----GUAGCAcuGCCGUau-GCGG- -5'
16214 3' -55.5 NC_004065.1 + 78017 0.79 0.399881
Target:  5'- aGGCGGgugACAUC--GAUGGCGUGCGCCg -3'
miRNA:   3'- cCCGCC---UGUAGcaCUGCCGUAUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 78282 0.66 0.967125
Target:  5'- -uGCGGugGUCGUaGCGGCucucgaGgGCCu -3'
miRNA:   3'- ccCGCCugUAGCAcUGCCGua----UgCGG- -5'
16214 3' -55.5 NC_004065.1 + 78839 0.68 0.93171
Target:  5'- aGGCGGAgAagGguaggaagGGCGGCcgGCGCg -3'
miRNA:   3'- cCCGCCUgUagCa-------CUGCCGuaUGCGg -5'
16214 3' -55.5 NC_004065.1 + 79344 0.66 0.97529
Target:  5'- -cGCGGAgGaCGagGGCGGCGcgGCGCUg -3'
miRNA:   3'- ccCGCCUgUaGCa-CUGCCGUa-UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 79387 0.74 0.674247
Target:  5'- uGGGCGGACGcgcugaaacacacgaUCGUgGACaGCAUA-GCCg -3'
miRNA:   3'- -CCCGCCUGU---------------AGCA-CUGcCGUAUgCGG- -5'
16214 3' -55.5 NC_004065.1 + 79640 0.66 0.97765
Target:  5'- -uGCGGGCGUgCGUGuCGGCGcugAUGaCCc -3'
miRNA:   3'- ccCGCCUGUA-GCACuGCCGUa--UGC-GG- -5'
16214 3' -55.5 NC_004065.1 + 79817 0.67 0.96072
Target:  5'- gGGGaagaCGGGCAugagcgugUUGUGACGGCcuugACGaCCu -3'
miRNA:   3'- -CCC----GCCUGU--------AGCACUGCCGua--UGC-GG- -5'
16214 3' -55.5 NC_004065.1 + 81892 0.7 0.871744
Target:  5'- cGGCGGGCGUgcUGAgguCGGCGUggACGUCg -3'
miRNA:   3'- cCCGCCUGUAgcACU---GCCGUA--UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 85552 0.7 0.878694
Target:  5'- cGGCGcACGUCGUGuuCGGCGccaugguCGCCu -3'
miRNA:   3'- cCCGCcUGUAGCACu-GCCGUau-----GCGG- -5'
16214 3' -55.5 NC_004065.1 + 88453 0.67 0.96072
Target:  5'- cGGGCgaGGGCGUCGcagGucuuGCGcGCG-ACGCCg -3'
miRNA:   3'- -CCCG--CCUGUAGCa--C----UGC-CGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 88961 0.66 0.97529
Target:  5'- cGGGCucGCG-CGUGAUGGUGgccaccugggGCGCCu -3'
miRNA:   3'- -CCCGccUGUaGCACUGCCGUa---------UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 91189 0.69 0.902001
Target:  5'- -cGCGGAagcgccgucggCGUGcGCGGCAUcgGCGCCg -3'
miRNA:   3'- ccCGCCUgua--------GCAC-UGCCGUA--UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 96138 0.66 0.970034
Target:  5'- aGGGUGGccCGUCGUuccgccCGGC--GCGCCg -3'
miRNA:   3'- -CCCGCCu-GUAGCAcu----GCCGuaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 96281 0.67 0.964022
Target:  5'- gGGGCGGcCAggggCGUcACGG---ACGCCg -3'
miRNA:   3'- -CCCGCCuGUa---GCAcUGCCguaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 96762 0.68 0.94108
Target:  5'- aGGGC-GACggCGgaGGCGGCAUcGCgGCCg -3'
miRNA:   3'- -CCCGcCUGuaGCa-CUGCCGUA-UG-CGG- -5'
16214 3' -55.5 NC_004065.1 + 97586 0.67 0.964022
Target:  5'- gGGGCGGACGgcgcaacaCGUcGAaggaGGCcgcCGCCg -3'
miRNA:   3'- -CCCGCCUGUa-------GCA-CUg---CCGuauGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.