miRNA display CGI


Results 81 - 100 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16214 3' -55.5 NC_004065.1 + 99379 0.67 0.949576
Target:  5'- uGGGCaugacGGGCGUgGgcugccUGGCGGCGgGCGCg -3'
miRNA:   3'- -CCCG-----CCUGUAgC------ACUGCCGUaUGCGg -5'
16214 3' -55.5 NC_004065.1 + 99932 0.78 0.459815
Target:  5'- aGGGCGGGCGcCGa-ACGGCAU-CGCCg -3'
miRNA:   3'- -CCCGCCUGUaGCacUGCCGUAuGCGG- -5'
16214 3' -55.5 NC_004065.1 + 101426 0.73 0.737716
Target:  5'- gGGGCGGcugGCG-CGUG-CGG-AUGCGCCu -3'
miRNA:   3'- -CCCGCC---UGUaGCACuGCCgUAUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 101515 0.67 0.957214
Target:  5'- -cGCGGagGCAUCGUcgucgguggaGGCGGCAgcagcagcgGCGCUg -3'
miRNA:   3'- ccCGCC--UGUAGCA----------CUGCCGUa--------UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 101575 0.7 0.867478
Target:  5'- uGGUGGACA-CGUauucggacagggagaGGCGGCGcGCGUCg -3'
miRNA:   3'- cCCGCCUGUaGCA---------------CUGCCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 102028 0.7 0.878694
Target:  5'- cGGCGGGCcaccUCgGUGACccgcggcggccgGGCGUuaGCGCCg -3'
miRNA:   3'- cCCGCCUGu---AG-CACUG------------CCGUA--UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 103540 0.7 0.842009
Target:  5'- uGGGUGGAaacaguUCGUGACGGCGcaauaAC-CCa -3'
miRNA:   3'- -CCCGCCUgu----AGCACUGCCGUa----UGcGG- -5'
16214 3' -55.5 NC_004065.1 + 103724 0.67 0.964022
Target:  5'- uGGCGGGCGugaUCGUGAgcacgcacaccgUGGUgcagGCGCUg -3'
miRNA:   3'- cCCGCCUGU---AGCACU------------GCCGua--UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 104908 0.67 0.964022
Target:  5'- cGGcGCGGugGUgccGGCGGCGUacACGCa -3'
miRNA:   3'- -CC-CGCCugUAgcaCUGCCGUA--UGCGg -5'
16214 3' -55.5 NC_004065.1 + 105001 0.68 0.921456
Target:  5'- cGGGCGGcug-UGUGACgagccgcugcuGGCGUACGUg -3'
miRNA:   3'- -CCCGCCuguaGCACUG-----------CCGUAUGCGg -5'
16214 3' -55.5 NC_004065.1 + 105227 0.71 0.817836
Target:  5'- cGGCGGACGUCGgacgaggaGAUGGUG-GCGCa -3'
miRNA:   3'- cCCGCCUGUAGCa-------CUGCCGUaUGCGg -5'
16214 3' -55.5 NC_004065.1 + 105372 0.7 0.842009
Target:  5'- cGGCGGACccggacUCGcUGACGGCcgGCGa- -3'
miRNA:   3'- cCCGCCUGu-----AGC-ACUGCCGuaUGCgg -5'
16214 3' -55.5 NC_004065.1 + 105450 0.68 0.93171
Target:  5'- uGGcGaCGGACGagaaCGUGACGGCGaaccagGCgGCCg -3'
miRNA:   3'- -CC-C-GCCUGUa---GCACUGCCGUa-----UG-CGG- -5'
16214 3' -55.5 NC_004065.1 + 105971 0.66 0.977422
Target:  5'- uGGuGCGGACGgacacguUCGaGACGGac-ACGCUg -3'
miRNA:   3'- -CC-CGCCUGU-------AGCaCUGCCguaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 106135 0.67 0.964022
Target:  5'- gGGGC-GACGaCGUGcACGGCGcaccUGCGgCg -3'
miRNA:   3'- -CCCGcCUGUaGCAC-UGCCGU----AUGCgG- -5'
16214 3' -55.5 NC_004065.1 + 108628 0.67 0.949576
Target:  5'- cGGCGGGCAgcuggugcugaUCGUGuucuGCGuGCcgcugGCGCCc -3'
miRNA:   3'- cCCGCCUGU-----------AGCAC----UGC-CGua---UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 108788 0.67 0.964022
Target:  5'- uGGCGG-CGUCGaaccuggcgUGGCGGcCGUucaGCCg -3'
miRNA:   3'- cCCGCCuGUAGC---------ACUGCC-GUAug-CGG- -5'
16214 3' -55.5 NC_004065.1 + 109132 0.67 0.96072
Target:  5'- uGGcGgGGACGgcggGUGACGGCGguucCGUCg -3'
miRNA:   3'- -CC-CgCCUGUag--CACUGCCGUau--GCGG- -5'
16214 3' -55.5 NC_004065.1 + 109869 0.69 0.898307
Target:  5'- cGGGCGGugccaccgGCGUCGccGCGGCc-GCGUCg -3'
miRNA:   3'- -CCCGCC--------UGUAGCacUGCCGuaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 110219 0.69 0.898307
Target:  5'- aGGGaagaGGGCuUCGccGGCGGC-UGCGUCa -3'
miRNA:   3'- -CCCg---CCUGuAGCa-CUGCCGuAUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.