miRNA display CGI


Results 21 - 40 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16214 3' -55.5 NC_004065.1 + 194797 0.66 0.971957
Target:  5'- aGGGCGaucgucgagccccuGaACGcCGUGGCGGUGgcCGCCa -3'
miRNA:   3'- -CCCGC--------------C-UGUaGCACUGCCGUauGCGG- -5'
16214 3' -55.5 NC_004065.1 + 194413 0.68 0.942849
Target:  5'- cGGCGGGCGUUccaGACGGaguucuccccggGCGCCu -3'
miRNA:   3'- cCCGCCUGUAGca-CUGCCgua---------UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 193647 0.77 0.486925
Target:  5'- cGGGaCGGAgGUCucUGugGGCAaGCGCCa -3'
miRNA:   3'- -CCC-GCCUgUAGc-ACugCCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 192767 0.72 0.765481
Target:  5'- gGGGUGGuCGUCGUGucCGGUuuuCGCUg -3'
miRNA:   3'- -CCCGCCuGUAGCACu-GCCGuauGCGG- -5'
16214 3' -55.5 NC_004065.1 + 191972 0.72 0.79226
Target:  5'- cGGCGGcACGUUG-GACGGguCGUGgGCCa -3'
miRNA:   3'- cCCGCC-UGUAGCaCUGCC--GUAUgCGG- -5'
16214 3' -55.5 NC_004065.1 + 191384 0.76 0.55284
Target:  5'- aGGGCGcGuACAUCGUGAUGGgAU-CGUCg -3'
miRNA:   3'- -CCCGC-C-UGUAGCACUGCCgUAuGCGG- -5'
16214 3' -55.5 NC_004065.1 + 189749 0.66 0.972753
Target:  5'- gGGGagacgaugaGGAUugcgGUGGCGGCAguggACGCUg -3'
miRNA:   3'- -CCCg--------CCUGuag-CACUGCCGUa---UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 188256 0.71 0.800929
Target:  5'- aGGCGGACAg-GUcGGCGGuCAucUugGCCa -3'
miRNA:   3'- cCCGCCUGUagCA-CUGCC-GU--AugCGG- -5'
16214 3' -55.5 NC_004065.1 + 184844 0.69 0.910318
Target:  5'- uGGGUucggccgagGGAUcgaGUCGagcgGGCGGCGggACGCCg -3'
miRNA:   3'- -CCCG---------CCUG---UAGCa---CUGCCGUa-UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 182522 0.68 0.936505
Target:  5'- gGGGCGGugGUCccaaucaagaUGGCGGCGUua-CCa -3'
miRNA:   3'- -CCCGCCugUAGc---------ACUGCCGUAugcGG- -5'
16214 3' -55.5 NC_004065.1 + 179676 0.66 0.97529
Target:  5'- cGGGgGGGCucgggAUCGcGGCGGUGgccACGCg -3'
miRNA:   3'- -CCCgCCUG-----UAGCaCUGCCGUa--UGCGg -5'
16214 3' -55.5 NC_004065.1 + 174119 0.72 0.774527
Target:  5'- cGGcGCGGACucCGUGagagguGCGGCAUcggccuggACGCCg -3'
miRNA:   3'- -CC-CGCCUGuaGCAC------UGCCGUA--------UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 173439 0.72 0.79226
Target:  5'- gGGGUGacguucGACGUaccgGUGGCGGCGcucgACGCCa -3'
miRNA:   3'- -CCCGC------CUGUAg---CACUGCCGUa---UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 171957 0.74 0.640865
Target:  5'- aGGCGGGCG--GUGGCGGCGgcgGCGgCg -3'
miRNA:   3'- cCCGCCUGUagCACUGCCGUa--UGCgG- -5'
16214 3' -55.5 NC_004065.1 + 169854 0.67 0.949576
Target:  5'- cGGGCcaGCGUCGaccugUGcAUGGCGgGCGCCg -3'
miRNA:   3'- -CCCGccUGUAGC-----AC-UGCCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 168641 0.66 0.97529
Target:  5'- cGGGCGGAgc-CGgcGCGGCG-ACGUCg -3'
miRNA:   3'- -CCCGCCUguaGCacUGCCGUaUGCGG- -5'
16214 3' -55.5 NC_004065.1 + 168548 0.66 0.97765
Target:  5'- cGGCGGugGUgGcaGCGGCGgcgGCGgCg -3'
miRNA:   3'- cCCGCCugUAgCacUGCCGUa--UGCgG- -5'
16214 3' -55.5 NC_004065.1 + 168179 0.68 0.93171
Target:  5'- gGGGCGcGACA-----GCGGCGcgACGCCu -3'
miRNA:   3'- -CCCGC-CUGUagcacUGCCGUa-UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 166137 0.77 0.505411
Target:  5'- cGGCaGaGACGUCGgcgccGGCGGCAgcgGCGCCg -3'
miRNA:   3'- cCCG-C-CUGUAGCa----CUGCCGUa--UGCGG- -5'
16214 3' -55.5 NC_004065.1 + 165974 0.67 0.955011
Target:  5'- cGGUGGACGUCGcucuucucgggguaGAUGGUacacAUGCGUCu -3'
miRNA:   3'- cCCGCCUGUAGCa-------------CUGCCG----UAUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.